Difference between revisions of "3NUCLE2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine synthase * Synonym(s): ==...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3NUCLE2 3NUCLE2] == * direction: ** REVERSIBLE * common name: ** 3 nucleotidase 3 UMP * Synonym...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/3NUCLE2 3NUCLE2] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Spermidine synthase
+
** 3  nucleotidase  3  UMP
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ptrc]][c] '''+''' 1.0 [[ametam]][c] '''=>''' 1.0 [[spmd]][c] '''+''' 1.0 [[5mta]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[3ump]][c] '''<=>''' 1.0 [[pi]][c] '''+''' 1.0 [[uri]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Putrescine[c] '''+''' 1.0 S-Adenosylmethioninamine[c] '''=>''' 1.0 Spermidine[c] '''+''' 1.0 5-Methylthioadenosine[c] '''+''' 1.0 H+[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 3  UMP C9H11N2O9P[c] '''<=>''' 1.0 Phosphate[c] '''+''' 1.0 Uridine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF0062]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
 
−
** '''25''' reactions found over '''135''' reactions in the full pathway
 
−
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
 
−
** '''10''' reactions found over '''39''' reactions in the full pathway
 
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
 
−
** '''22''' reactions found over '''149''' reactions in the full pathway
 
−
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
 
−
** '''8''' reactions found over '''91''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27890 27890]
−
* EC Number : 2.5.1.16
+
* BioCyc : META:RXN-14115
−
* MetaNetX (MNX) Equation : MNXR95860
+
* MetaNetX (MNX) Equation : MNXR94932
−
* KEGG Reaction : R01920
+
* KEGG Reaction : R01877
−
* BioCyc : META:SPERMIDINESYN-RXN
+
* EC Number : 3.1.3.6
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Spermidine synthase}}
+
{{#set: common name=3  nucleotidase  3  UMP }}
−
{{#set: in pathway=map01100|map00270|map00480|map00330|map00410}}
+
{{#set: gene associated=EF0062}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:43, 21 March 2018

Reaction 3NUCLE2

  • direction:
    • REVERSIBLE
  • common name:
    • 3 nucleotidase 3 UMP
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 3 UMP C9H11N2O9P[c] <=> 1.0 Phosphate[c] + 1.0 Uridine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN-14115
  • MetaNetX (MNX) Equation : MNXR94932
  • KEGG Reaction : R01877
  • EC Number : 3.1.3.6




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