|
|
| Line 1: |
Line 1: |
| − | [[Category:Pathway]] | + | [[Category:Reaction]] |
| − | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380] == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_pi ExchangeSeed_pi] == |
| − | * common_name: | + | * direction: |
| − | ** Tryptophan metabolism | + | ** REVERSIBLE |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction(s) found == | + | == Reaction Formula == |
| − | '''7''' reactions found over '''163''' reactions in the full pathway
| + | * With identifiers: |
| − | * [[ABUTD]] | + | ** 1.0 [[pi]][C-BOUNDARY] '''<=>''' 1.0 [[pi]][e] |
| − | ** 1 associated gene(s):
| + | * With common name(s): |
| − | *** [[EF0253]]
| + | ** 1.0 Phosphate[C-BOUNDARY] '''<=>''' 1.0 Phosphate[e] |
| − | ** 1 reconstruction source(s) associated: | + | |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | == Genes associated with this reaction == |
| − | * [[ACACT1r]]
| + | == Pathways == |
| − | ** 1 associated gene(s):
| + | == Reconstruction information == |
| − | *** [[EF1364]]
| + | * Category: [[manual]] |
| − | ** 2 reconstruction source(s) associated:
| + | ** Source: [[manual-import_from_medium]] |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | *** Comment: [[added to manage seeds from boundary to extracellular compartment]] |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
| − | * [[ASPO1]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF2556]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
| − | * [[CAT]] | + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF1597]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | |
| − | * [[GLYALDDr]]
| + | |
| − | ** 1 associated gene(s): | + | |
| − | *** [[EF0253]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
| − | * [[TRPTA]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF1706]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | |
| − | * [[TYRCBOX]]
| + | |
| − | ** 0 associated gene:
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
| − | == Reaction(s) not found == | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/2OXOADOXm 2OXOADOXm] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/3HAO 3HAO]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/3HKYNAKGAT 3HKYNAKGAT]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/3HLYTCL 3HLYTCL]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/3HXKYNDCL 3HXKYNDCL] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/5HLTDL 5HLTDL] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTO2OX 5HOXINDACTO2OX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/5HTRPDOX 5HTRPDOX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/5HXKYNDCL 5HXKYNDCL]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACSOMT ACSOMT]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACSRTNMT ACSRTNMT]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/AKGDa AKGDa]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/AKGDam AKGDam]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ALCD26xi ALCD26xi]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ALCD26xim ALCD26xim]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/AM6SAD AM6SAD]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/AMID AMID]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/AMID2 AMID2]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/AMID3 AMID3]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/AMID4 AMID4]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/AMID5 AMID5]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/AMID_1 AMID_1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ASPOm ASPOm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/CAT2p CAT2p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/CATm CATm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/CATp CATp]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/CITALALDOR CITALALDOR]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1 ECOAH1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECOAH9ir ECOAH9ir]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/FKYNH FKYNH]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD1 HACD1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HDC HDC]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HISDC HISDC]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HKYNH HKYNH]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/INDPYRD INDPYRD]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/KYN KYN]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/KYN3OX KYN3OX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/KYNAKGAT KYNAKGAT]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/LFORKYNHYD LFORKYNHYD]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/LIDOMO LIDOMO]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/LTDCL LTDCL]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MELATN23DOX MELATN23DOX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/NTRLASE NTRLASE]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/NTRLASE2 NTRLASE2]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/NTRLASE3 NTRLASE3]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/OXOADLR OXOADLR]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/P4503A43r P4503A43r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PCLAD PCLAD]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PPYRDC PPYRDC]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/QUILSYN QUILSYN]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/RAHY RAHY]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SRTN23OX SRTN23OX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SRTNACT SRTNACT]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SRTNMTX SRTNMTX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/TRPAS2 TRPAS2]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/TRPO2 TRPO2]
| + | |
| | == External links == | | == External links == |
| − | {{#set: common_name=Tryptophan metabolism}} | + | {{#set: direction=REVERSIBLE}} |
| − | {{#set: reaction found=7}} | + | {{#set: in pathway=}} |
| − | {{#set: total reaction=163}} | + | {{#set: reconstruction category=manual}} |
| − | {{#set: completion rate=4.0}} | + | {{#set: reconstruction source=manual-import_from_medium}} |
| | + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
