Difference between revisions of "TRDR"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LEUTAi LEUTAi] == * direction: ** LEFT-TO-RIGHT * common name: ** Leucine transaminase (irreversibl...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TRDR TRDR] == * direction: ** LEFT-TO-RIGHT * common name: ** Thioredoxin reductase (NADPH) * Synon...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/LEUTAi LEUTAi] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TRDR TRDR] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Leucine transaminase (irreversible)
+
** Thioredoxin reductase (NADPH)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[glu__L]][c] '''+''' 1.0 [[4mop]][c] '''=>''' 1.0 [[akg]][c] '''+''' 1.0 [[leu__L]][c]
+
** 1.0 [[trdox]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadph]][c] '''=>''' 1.0 [[trdrd]][c] '''+''' 1.0 [[nadp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Glutamate[c] '''+''' 1.0 4-Methyl-2-oxopentanoate[c] '''=>''' 1.0 2-Oxoglutarate[c] '''+''' 1.0 L-Leucine[c]
+
** 1.0 Oxidized thioredoxin[c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''=>''' 1.0 Reduced thioredoxin[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1793]]
+
* Gene: [[EF1405]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF2899]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF1338]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
** '''6''' reactions found over '''35''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00280]]: [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280]
+
−
** '''9''' reactions found over '''155''' reactions in the full pathway
+
−
* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
+
−
** '''9''' reactions found over '''49''' reactions in the full pathway
+
−
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
+
−
** '''14''' reactions found over '''80''' reactions in the full pathway
+
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''56''' reactions found over '''228''' reactions in the full pathway
+
−
* [[map00966]]: [http://www.genome.jp/dbget-bin/www_bget?map00966 map00966]
+
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* BioCyc : META:THIOREDOXIN-REDUCT-NADPH-RXN
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18321 18321]
+
* MetaNetX (MNX) Equation : MNXR104766
−
* BioCyc : META:BRANCHED-CHAINAMINOTRANSFERLEU-RXN
+
* KEGG Reaction : R02016
−
* MetaNetX (MNX) Equation : MNXR96229
+
* EC Number : 1.6.4.5
−
* KEGG Reaction : R01090
+
−
* EC Number : 2.6.1.42
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Leucine transaminase (irreversible)}}
+
{{#set: common name=Thioredoxin reductase (NADPH)}}
−
{{#set: gene associated=EF1793}}
+
{{#set: gene associated=EF1405|EF2899|EF1338}}
−
{{#set: in pathway=map01100|map01110|map00280|map00290|map01210|map01230|map00966}}
+
{{#set: in pathway=map00450}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:30, 21 March 2018

Reaction TRDR

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Thioredoxin reductase (NADPH)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Oxidized thioredoxin[c] + 1.0 H+[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] => 1.0 Reduced thioredoxin[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:THIOREDOXIN-REDUCT-NADPH-RXN
  • MetaNetX (MNX) Equation : MNXR104766
  • KEGG Reaction : R02016
  • EC Number : 1.6.4.5




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