Difference between revisions of "RPE"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDC GLUDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamate Decarboxylase * Synonym(s...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RPE RPE] == * direction: ** REVERSIBLE * common name: ** Ribulose 5-phosphate 3-epimerase * Synonym...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDC GLUDC] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RPE RPE] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Glutamate Decarboxylase
+
** Ribulose 5-phosphate 3-epimerase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h]][c] '''+''' 1.0 [[glu__L]][c] '''=>''' 1.0 [[4abut]][c] '''+''' 1.0 [[co2]][c]
+
** 1.0 [[ru5p__D]][c] '''<=>''' 1.0 [[xu5p__D]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H+[c] '''+''' 1.0 L-Glutamate[c] '''=>''' 1.0 4-Aminobutanoate[c] '''+''' 1.0 CO2 CO2[c]
+
** 1.0 D-Ribulose 5-phosphate[c] '''<=>''' 1.0 D-Xylulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF3118]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
** '''104''' reactions found over '''715''' reactions in the full pathway
 
** '''104''' reactions found over '''715''' reactions in the full pathway
−
* [[map00650]]: [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650]
+
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
−
** '''14''' reactions found over '''156''' reactions in the full pathway
+
** '''15''' reactions found over '''54''' reactions in the full pathway
−
* [[map00430]]: [http://www.genome.jp/dbget-bin/www_bget?map00430 map00430]
+
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
−
** '''5''' reactions found over '''24''' reactions in the full pathway
+
** '''45''' reactions found over '''220''' reactions in the full pathway
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
−
** '''22''' reactions found over '''93''' reactions in the full pathway
+
** '''56''' reactions found over '''228''' reactions in the full pathway
−
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
+
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
−
** '''8''' reactions found over '''91''' reactions in the full pathway
+
** '''16''' reactions found over '''71''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''26''' reactions found over '''69''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 5.1.3.1
 +
* BioCyc : META:RIBULP3EPIM-RXN
 +
* MetaNetX (MNX) Equation : MNXR104083
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17785 17785]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
−
* EC Number : 4.1.1.15
+
* Reactome : REACT_R-ATH-199803
−
* MetaNetX (MNX) Equation : MNXR95942
+
* KEGG Reaction : R01529
−
* KEGG Reaction : R00261
+
{{#set: direction=REVERSIBLE}}
−
* BioCyc : META:GLUTDECARBOX-RXN
+
{{#set: common name=Ribulose 5-phosphate 3-epimerase}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: gene associated=EF3118}}
−
{{#set: common name=Glutamate Decarboxylase}}
+
{{#set: in pathway=map01100|map01110|map01120|map00040|map01200|map01230|map00710|map01130|map00030}}
−
{{#set: in pathway=map01100|map01110|map01120|map00650|map00430|map00250|map00410}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=meneco}}
+
−
{{#set: reconstruction comment=added for gapfilling}}
+

Latest revision as of 16:31, 21 March 2018

Reaction RPE

  • direction:
    • REVERSIBLE
  • common name:
    • Ribulose 5-phosphate 3-epimerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Ribulose 5-phosphate[c] <=> 1.0 D-Xylulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 5.1.3.1
  • BioCyc : META:RIBULP3EPIM-RXN
  • MetaNetX (MNX) Equation : MNXR104083
  • RHEA:
  • Reactome : REACT_R-ATH-199803
  • KEGG Reaction : R01529




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