Difference between revisions of "GCALDD"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RBK RBK] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribokinase * Synonym(s): == Reaction F...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GCALDD GCALDD] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycolaldehyde dehydrogenase * Sy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/RBK RBK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GCALDD GCALDD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Ribokinase
+
** Glycolaldehyde dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[rib__D]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[r5p]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[gcald]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[glyclt]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 D-Ribose[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Alpha-D-Ribose 5-phosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Glycolaldehyde[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 2.0 H+[c] '''+''' 1.0 Glycolate C2H3O3[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2961]]
+
* Gene: [[EF0253]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
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* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
** '''26''' reactions found over '''69''' reactions in the full pathway
+
** '''21''' reactions found over '''129''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
*** Tool: [[pantograph]]
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR103431
+
* RHEA:
* EC Number : 2.7.1.15
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20001 20001]
 +
* BioCyc : META:GLYCOLALD-DEHYDROG-RXN
 +
* MetaNetX (MNX) Equation : MNXR100060
 +
* KEGG Reaction : R01333
 +
* EC Number : 1.2.1.21
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Ribokinase}}
+
{{#set: common name=Glycolaldehyde dehydrogenase}}
{{#set: gene associated=EF2961}}
+
{{#set: gene associated=EF0253}}
{{#set: in pathway=map00030}}
+
{{#set: in pathway=map00630|map01120}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:33, 21 March 2018

Reaction GCALDD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycolaldehyde dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 Glycolaldehyde[c] => 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 2.0 H+[c] + 1.0 Glycolate C2H3O3[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:GLYCOLALD-DEHYDROG-RXN
  • MetaNetX (MNX) Equation : MNXR100060
  • KEGG Reaction : R01333
  • EC Number : 1.2.1.21