Difference between revisions of "SERTRS2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGLYCP PGLYCP] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoglycolate phosphatase * Sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERTRS2 SERTRS2] == * direction: ** LEFT-TO-RIGHT * common name: ** Seryl-tRNA synthetase (selenocy...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PGLYCP PGLYCP] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SERTRS2 SERTRS2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phosphoglycolate phosphatase
+
** Seryl-tRNA synthetase (selenocystein)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[2pglyc]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[glyclt]][c]
+
** 1.0 [[ser__L]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[trnasecys]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[sertrna_sec]][c] '''+''' 1.0 [[ppi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 2-Phosphoglycolate[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Glycolate C2H3O3[c]
+
** 1.0 L-Serine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 TRNA(SeCys)[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 L-Seryl-tRNA(Sec)[c] '''+''' 1.0 Diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2927]]
+
* Gene: [[EF3292]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[EF2916]]
+
* Gene: [[EF0100]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[EF2481]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
* [[EF0369]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
** '''23''' reactions found over '''49''' reactions in the full pathway
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
+
−
** '''45''' reactions found over '''220''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
+
−
** '''21''' reactions found over '''129''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-l_plantarum_wcfs1]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR104309
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
+
* EC Number : 6.1.1.11
−
* BioCyc : META:GPH-RXN
+
−
* MetaNetX (MNX) Equation : MNXR102543
+
−
* KEGG Reaction : R01334
+
−
* EC Number : 3.1.3.18
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Phosphoglycolate phosphatase}}
+
{{#set: common name=Seryl-tRNA synthetase (selenocystein)}}
−
{{#set: gene associated=EF2927|EF2916|EF2481|EF0369}}
+
{{#set: gene associated=EF3292|EF0100}}
−
{{#set: in pathway=map01100|map01130|map01200|map01110|map00630}}
+
{{#set: in pathway=map00970}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:33, 21 March 2018

Reaction SERTRS2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Seryl-tRNA synthetase (selenocystein)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Serine[c] + 1.0 ATP C10H12N5O13P3[c] + 1.0 TRNA(SeCys)[c] => 1.0 AMP C10H12N5O7P[c] + 1.0 L-Seryl-tRNA(Sec)[c] + 1.0 Diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR104309
  • EC Number : 6.1.1.11




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