Difference between revisions of "CPPPGO"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/METTRS METTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Methionyl-tRNA synthetase * Synon...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CPPPGO CPPPGO] == * direction: ** LEFT-TO-RIGHT * common name: ** Coproporphyrinogen oxidase (O2 re...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/METTRS METTRS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CPPPGO CPPPGO] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Methionyl-tRNA synthetase
+
** Coproporphyrinogen oxidase (O2 required)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[trnamet]][c] '''+''' 1.0 [[met__L]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[mettrna]][c] '''+''' 1.0 [[ppi]][c]
+
** 1.0 [[cpppg3]][c] '''+''' 1.0 [[o2]][c] '''+''' 2.0 [[h]][c] '''=>''' 2.0 [[co2]][c] '''+''' 1.0 [[pppg9]][c] '''+''' 2.0 [[h2o]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 TRNA(Met)[c] '''+''' 1.0 L-Methionine[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 L-Methionyl-tRNA (Met)[c] '''+''' 1.0 Diphosphate[c]
+
** 1.0 Coproporphyrinogen III[c] '''+''' 1.0 O2 O2[c] '''+''' 2.0 H+[c] '''=>''' 2.0 CO2 CO2[c] '''+''' 1.0 Protoporphyrinogen IX[c] '''+''' 2.0 H2O H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0930]]
+
* Gene: [[EF1305]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''6''' reactions found over '''35''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''23''' reactions found over '''49''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00860]]: [http://www.genome.jp/dbget-bin/www_bget?map00860 map00860]
 +
** '''4''' reactions found over '''106''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-l_plantarum_wcfs1]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR101488
+
* RHEA:
−
* KEGG Reaction : R03659
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
−
* EC Number : 6.1.1.10
+
* BioCyc : META:RXN0-1461
 +
* MetaNetX (MNX) Equation : MNXR96880
 +
* KEGG Reaction : R03220
 +
* EC Number : 1.3.3.3
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Methionyl-tRNA synthetase}}
+
{{#set: common name=Coproporphyrinogen oxidase (O2 required)}}
−
{{#set: gene associated=EF0930}}
+
{{#set: gene associated=EF1305}}
−
{{#set: in pathway=map00450|map00970}}
+
{{#set: in pathway=map01100|map01110|map00860}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:34, 21 March 2018

Reaction CPPPGO

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Coproporphyrinogen oxidase (O2 required)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Coproporphyrinogen III[c] + 1.0 O2 O2[c] + 2.0 H+[c] => 2.0 CO2 CO2[c] + 1.0 Protoporphyrinogen IX[c] + 2.0 H2O H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN0-1461
  • MetaNetX (MNX) Equation : MNXR96880
  • KEGG Reaction : R03220
  • EC Number : 1.3.3.3




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