Difference between revisions of "BLUB"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ATPS3r ATPS3r] == * direction: ** REVERSIBLE * common name: ** ATP synthase three protons for one A...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/BLUB BLUB] == * direction: ** LEFT-TO-RIGHT * common name: ** Cobalamin biosynthesis * Synonym(s):...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/ATPS3r ATPS3r] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/BLUB BLUB] ==
 
* direction:
 
* direction:
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** ATP synthase three protons for one ATP
+
** Cobalamin biosynthesis
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 3.0 [[h]][e] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[adp]][c] '''<=>''' 1.0 [[h2o]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[atp]][c]
+
** 1.0 [[fmnh2]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[o2]][c] '''=>''' 1.0 [[e4p]][c] '''+''' 1.0 [[dmbzid]][c] '''+''' 1.0 [[doxopa]][c] '''+''' 1.0 [[urea]][c]
 
* With common name(s):
 
* With common name(s):
** 3.0 H+[e] '''+''' 1.0 Phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''<=>''' 1.0 H2O H2O[c] '''+''' 2.0 H+[c] '''+''' 1.0 ATP C10H12N5O13P3[c]
+
** 1.0 Reduced FMN[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 O2 O2[c] '''=>''' 1.0 D-Erythrose 4-phosphate[c] '''+''' 1.0 5,6-Dimethylbenzimidazole[c] '''+''' 1.0 1,2-Dioxopropanoic acid[c] '''+''' 1.0 Urea CH4N2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[EF2610]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
* [[EF2614]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
* [[EF2608]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
* [[EF2613]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
* [[EF2612]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
* [[EF2609]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
* [[EF2611]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
* [[EF2607]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
+
* Category: [[gap-filling]]
** Source: [[orthology-l_plantarum_wcfs1]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
*** Tool: [[pantograph]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
{{#set: direction=REVERSIBLE}}
+
* MetaNetX (MNX) Equation : MNXR96311
{{#set: common name=ATP synthase three protons for one ATP }}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: gene associated=EF2610|EF2614|EF2608|EF2613|EF2612|EF2609|EF2611|EF2607}}
+
{{#set: common name=Cobalamin biosynthesis}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 16:38, 21 March 2018

Reaction BLUB

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cobalamin biosynthesis
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Reduced FMN[c] + 1.0 H2O H2O[c] + 1.0 O2 O2[c] => 1.0 D-Erythrose 4-phosphate[c] + 1.0 5,6-Dimethylbenzimidazole[c] + 1.0 1,2-Dioxopropanoic acid[c] + 1.0 Urea CH4N2O[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR96311