Difference between revisions of "CSPMDDH"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ADSL2r ADSL2r] == * direction: ** REVERSIBLE * common name: ** Adenylosuccinate lyase * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CSPMDDH CSPMDDH] == * direction: ** LEFT-TO-RIGHT * common name: ** Carboxyspermidine dehydrogenase...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ADSL2r ADSL2r] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CSPMDDH CSPMDDH] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Adenylosuccinate lyase
+
** Carboxyspermidine dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[25aics]][c] '''<=>''' 1.0 [[fum]][c] '''+''' 1.0 [[aicar]][c]
+
** 1.0 [[h]][c] '''+''' 1.0 [[aspsa]][c] '''+''' 1.0 [[ptrc]][c] '''+''' 1.0 [[nadph]][c] '''=>''' 1.0 [[cspmd]][c] '''+''' 1.0 [[nadp]][c] '''+''' 1.0 [[h2o]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 (S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate[c] '''<=>''' 1.0 Fumarate[c] '''+''' 1.0 5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide[c]
+
** 1.0 H+[c] '''+''' 1.0 L-Aspartate 4-semialdehyde[c] '''+''' 1.0 Putrescine[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''=>''' 1.0 Carboxyspermidine[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 H2O H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF2361]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
** '''22''' reactions found over '''149''' reactions in the full pathway
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
−
** '''22''' reactions found over '''93''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
−
** '''97''' reactions found over '''298''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[gap-filling]]
−
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[meneco]]
−
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
+
**** Comment: [[added for gapfilling]]
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-l_plantarum_wcfs1]]
+
−
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
−
* Reactome : REACT_R-ATH-73800
+
* RHEA:
−
* MetaNetX (MNX) Equation : MNXR95494
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34111 34111]
−
* EC Number : 4.3.2.2
+
* EC Number : 1.5.1.43
−
* BioCyc : META:AICARSYN-RXN
+
* MetaNetX (MNX) Equation : MNXR96936
−
{{#set: direction=REVERSIBLE}}
+
* KEGG Reaction : R09079
−
{{#set: common name=Adenylosuccinate lyase}}
+
* BioCyc : META:RXN-11566
−
{{#set: gene associated=EF2361}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=map01100|map01130|map00250|map01110|map00230}}
+
{{#set: common name=Carboxyspermidine dehydrogenase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=map01100|map00330}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 15:39, 21 March 2018

Reaction CSPMDDH

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Carboxyspermidine dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 L-Aspartate 4-semialdehyde[c] + 1.0 Putrescine[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] => 1.0 Carboxyspermidine[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c] + 1.0 H2O H2O[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 1.5.1.43
  • MetaNetX (MNX) Equation : MNXR96936
  • KEGG Reaction : R09079
  • BioCyc : META:RXN-11566




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