Difference between revisions of "TMDPP"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RAFH RAFH] == * direction: ** LEFT-TO-RIGHT * common name: ** Raffinose hydrolyzing enzyme * Synony...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] == * direction: ** REVERSIBLE * common name: ** Thymidine phosphorylase * Synonym(s):...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/RAFH RAFH] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
** Raffinose hydrolyzing enzyme
+
** Thymidine phosphorylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[raffin]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[melib]][c] '''+''' 1.0 [[fru]][c]
+
** 1.0 [[pi]][c] '''+''' 1.0 [[thymd]][c] '''<=>''' 1.0 [[2dr1p]][c] '''+''' 1.0 [[thym]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Raffinose C18H32O16[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Melibiose C12H22O11[c] '''+''' 1.0 D-Fructose[c]
+
** 1.0 Phosphate[c] '''+''' 1.0 Thymidine C10H14N2O5[c] '''<=>''' 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''+''' 1.0 Thymine C5H6N2O2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF1603]]
+
* Gene: [[EF0173]]
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
* [[map00500]]: [http://www.genome.jp/dbget-bin/www_bget?map00500 map00500]
+
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
** '''15''' reactions found over '''81''' reactions in the full pathway
+
** '''22''' reactions found over '''72''' reactions in the full pathway
* [[map00052]]: [http://www.genome.jp/dbget-bin/www_bget?map00052 map00052]
+
** '''17''' reactions found over '''67''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR103420
+
* RHEA:
* KEGG Reaction : R02410
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16037 16037]
* EC Number : 3.2.1.26
+
* BioCyc : META:THYM-PHOSPH-RXN
{{#set: direction=LEFT-TO-RIGHT}}
+
* MetaNetX (MNX) Equation : MNXR104887
{{#set: common name=Raffinose hydrolyzing enzyme}}
+
* KEGG Reaction : R01570
{{#set: gene associated=EF1603}}
+
* EC Number : 2.4.2.2
{{#set: in pathway=map01100|map00500|map00052}}
+
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Thymidine phosphorylase}}
 +
{{#set: gene associated=EF0173}}
 +
{{#set: in pathway=map00240|map01100|map00983}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:39, 21 March 2018

Reaction TMDPP

  • direction:
    • REVERSIBLE
  • common name:
    • Thymidine phosphorylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Phosphate[c] + 1.0 Thymidine C10H14N2O5[c] <=> 1.0 2-Deoxy-D-ribose 1-phosphate[c] + 1.0 Thymine C5H6N2O2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:THYM-PHOSPH-RXN
  • MetaNetX (MNX) Equation : MNXR104887
  • KEGG Reaction : R01570
  • EC Number : 2.4.2.2