Difference between revisions of "MDDCP5ppc"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TDPDRR TDPDRR] == * direction: ** LEFT-TO-RIGHT * common name: ** DTDP-4-dehydrorhamnose reductase...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP5ppc MDDCP5ppc] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/TDPDRR TDPDRR] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP5ppc MDDCP5ppc] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** DTDP-4-dehydrorhamnose reductase
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[dtdp4d6dm]][c] '''+''' 1.0 [[nadph]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[nadp]][c] '''+''' 1.0 [[dtdprmn]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[murein5p3p]][c] '''=>''' 1.0 [[murein4p3p]][c] '''+''' 1.0 [[ala__D]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 DTDP-4-dehydro-6-deoxy-L-mannose[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 DTDP-L-rhamnose[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 Two linked disacharide pentapeptide and tripeptide murein units (uncrosslinked, middle of chain)[c] '''=>''' 1.0 Two linked disacharide tetrapeptide and tripeptide murein units (uncrosslinked, middle of chain)[c] '''+''' 1.0 D-Alanine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2191]]
+
* Gene: [[EF3129]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[manual-1_new_rxn_for_biomass]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
 
== Pathways  ==
 
== Pathways  ==
* [[map00521]]: [http://www.genome.jp/dbget-bin/www_bget?map00521 map00521]
 
** '''7''' reactions found over '''14''' reactions in the full pathway
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''135''' reactions found over '''694''' reactions in the full pathway
 
* [[map00523]]: [http://www.genome.jp/dbget-bin/www_bget?map00523 map00523]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
+
* Category: [[manual]]
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[manual-1_new_rxn_for_biomass]]
*** Tool: [[pantograph]]
+
*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
** Source: [[orthology-l_plantarum_wcfs1]]
+
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21796 21796]
 
* BioCyc : META:DTDPDEHYRHAMREDUCT-RXN
 
* MetaNetX (MNX) Equation : MNXR104760
 
* KEGG Reaction : R02777
 
* EC Number : 1.1.1.133
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=DTDP-4-dehydrorhamnose reductase}}
+
{{#set: gene associated=EF3129}}
{{#set: gene associated=EF2191}}
+
{{#set: in pathway=}}
{{#set: in pathway=map00521|map01130|map00523}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 15:40, 21 March 2018

Reaction MDDCP5ppc

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 Two linked disacharide pentapeptide and tripeptide murein units (uncrosslinked, middle of chain)[c] => 1.0 Two linked disacharide tetrapeptide and tripeptide murein units (uncrosslinked, middle of chain)[c] + 1.0 D-Alanine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links