Difference between revisions of "TDP"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ASPK ASPK] == * direction: ** REVERSIBLE * common name: ** Aspartate kinase * Synonym(s): == React...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TDP TDP] == * direction: ** LEFT-TO-RIGHT * common name: ** Thiamin pyrophosphatase * Synonym(s):...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ASPK ASPK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TDP TDP] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Aspartate kinase
+
** Thiamin pyrophosphatase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[asp__L]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[4pasp]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[thmpp]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[thmmp]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Aspartate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 4-Phospho-L-aspartate[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 Thiamine diphosphate[c] '''=>''' 1.0 H+[c] '''+''' 1.0 Thiamin monophosphate[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0368]]
+
* Gene: [[EF1595]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730]
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
** '''11''' reactions found over '''24''' reactions in the full pathway
−
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
+
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
−
** '''13''' reactions found over '''34''' reactions in the full pathway
+
** '''97''' reactions found over '''298''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''104''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
+
−
** '''14''' reactions found over '''80''' reactions in the full pathway
+
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
+
−
** '''25''' reactions found over '''135''' reactions in the full pathway
+
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''56''' reactions found over '''228''' reactions in the full pathway
+
−
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
+
−
** '''23''' reactions found over '''133''' reactions in the full pathway
+
−
* [[map00261]]: [http://www.genome.jp/dbget-bin/www_bget?map00261 map00261]
+
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-l_plantarum_wcfs1]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23776 23776]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27998 27998]
−
* BioCyc : META:ASPARTATEKIN-RXN
+
* BioCyc : META:RXN0-3542
−
* MetaNetX (MNX) Equation : MNXR96085
+
* MetaNetX (MNX) Equation : MNXR104756
−
* KEGG Reaction : R00480
+
* KEGG Reaction : R00615
−
* EC Number : 2.7.2.4
+
* EC Number : 3.6.1
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Aspartate kinase}}
+
{{#set: common name=Thiamin pyrophosphatase}}
−
{{#set: gene associated=EF0368}}
+
{{#set: gene associated=EF1595}}
−
{{#set: in pathway=map01100|map01110|map00300|map01120|map01210|map00270|map01230|map00260|map00261|map01130}}
+
{{#set: in pathway=map01100|map00730|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:40, 21 March 2018

Reaction TDP

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Thiamin pyrophosphatase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 Thiamine diphosphate[c] => 1.0 H+[c] + 1.0 Thiamin monophosphate[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN0-3542
  • MetaNetX (MNX) Equation : MNXR104756
  • KEGG Reaction : R00615
  • EC Number : 3.6.1




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