Difference between revisions of "PPCDC"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SALSYN SALSYN] == * direction: ** LEFT-TO-RIGHT * common name: ** Salicylate synthase * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PPCDC PPCDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphopantothenoylcysteine decarbo...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SALSYN SALSYN] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PPCDC PPCDC] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Salicylate synthase
+
** Phosphopantothenoylcysteine decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ichor]][c] '''=>''' 1.0 [[salc]][c] '''+''' 1.0 [[pyr]][c]
+
** 1.0 [[4ppcys]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[pan4p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Isochorismate[c] '''=>''' 1.0 Salicylate[c] '''+''' 1.0 Pyruvate[c]
+
** 1.0 N-((R)-4-Phosphopantothenoyl)-L-cysteine[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Pantetheine 4'-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF2656]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map00770]]: [http://www.genome.jp/dbget-bin/www_bget?map00770 map00770]
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
** '''17''' reactions found over '''75''' reactions in the full pathway
−
* [[map01053]]: [http://www.genome.jp/dbget-bin/www_bget?map01053 map01053]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 4.1.1.36
 +
* BioCyc : META:P-PANTOCYSDECARB-RXN
 +
* MetaNetX (MNX) Equation : MNXR103098
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27874 27874]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16793 16793]
−
* EC Number : 4.2.99.21
+
* Reactome : REACT_R-ATH-196840
−
* MetaNetX (MNX) Equation : MNXR104269
+
* KEGG Reaction : R03269
−
* KEGG Reaction : R06602
+
−
* BioCyc : META:RXN-1981
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Salicylate synthase}}
+
{{#set: common name=Phosphopantothenoylcysteine decarboxylase}}
−
{{#set: in pathway=map01130|map01110|map01053}}
+
{{#set: gene associated=EF2656}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map01100|map00770}}
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:44, 21 March 2018

Reaction PPCDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phosphopantothenoylcysteine decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 N-((R)-4-Phosphopantothenoyl)-L-cysteine[c] + 1.0 H+[c] => 1.0 CO2 CO2[c] + 1.0 Pantetheine 4'-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 4.1.1.36
  • BioCyc : META:P-PANTOCYSDECARB-RXN
  • MetaNetX (MNX) Equation : MNXR103098
  • RHEA:
  • Reactome : REACT_R-ATH-196840
  • KEGG Reaction : R03269




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