Difference between revisions of "GPDDA2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_D SERD_D] == * direction: ** LEFT-TO-RIGHT * common name: ** D-serine deaminase * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GPDDA2 GPDDA2] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycerophosphodiester phosphodies...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_D SERD_D] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GPDDA2 GPDDA2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** D-serine deaminase
+
** Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[ser__D]][c] '''=>''' 1.0 [[pyr]][c] '''+''' 1.0 [[nh4]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[g3pe]][c] '''=>''' 1.0 [[glyc3p]][c] '''+''' 1.0 [[etha]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 D-Serine[c] '''=>''' 1.0 Pyruvate[c] '''+''' 1.0 Ammonium[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 Sn-Glycero-3-phosphoethanolamine[c] '''=>''' 1.0 Glycerol 3-phosphate[c] '''+''' 1.0 Ethanolamine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2579]]
+
* Gene: [[EF0779]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF2163]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
+
* [[map00564]]: [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564]
** '''23''' reactions found over '''133''' reactions in the full pathway
+
** '''19''' reactions found over '''134''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13977 13977]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29319 29319]
* BioCyc : META:DSERDEAM-RXN
+
* BioCyc : META:RXN-14160
* MetaNetX (MNX) Equation : MNXR104338
+
* MetaNetX (MNX) Equation : MNXR100411
* KEGG Reaction : R00221
+
* KEGG Reaction : R01470
* EC Number : 4.3.1.18
+
* EC Number : 3.1.4.2
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=D-serine deaminase}}
+
{{#set: common name=Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)}}
{{#set: gene associated=EF2579}}
+
{{#set: gene associated=EF0779|EF2163}}
{{#set: in pathway=map00260}}
+
{{#set: in pathway=map00564}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:45, 21 March 2018

Reaction GPDDA2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 Sn-Glycero-3-phosphoethanolamine[c] => 1.0 Glycerol 3-phosphate[c] + 1.0 Ethanolamine[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN-14160
  • MetaNetX (MNX) Equation : MNXR100411
  • KEGG Reaction : R01470
  • EC Number : 3.1.4.2