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| − | == EFAEV583GEM description ==
| + | [[Category:Gene]] |
| − | == Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
| + | == Gene EF2651 == |
| − | The automatic reconstruction of ''Enterococcus_faecalis_str_v583'' results to a Genome scale Model containing 1187 reactions, 941 metabolites, 610 genes and 107 pathways. This GeM was obtained based on the following sources:
| + | * Synonym(s): |
| − | * Based on orthology data: | + | |
| − | ** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
| + | |
| − | *** From template ''E_COLI_SSTR_K12_SUBSTR_MG1655'' creation of a metabolic network containing: 528 reactions
| + | |
| − | *** From template ''L_PLANTARUM_WCFS1'' creation of a metabolic network containing: 385 reactions
| + | |
| − | *** From template ''B_SUBTILIS_SUBSP_SUBTILIS_STR168'' creation of a metabolic network containing: 463 reactions
| + | |
| − | * Based on expertise:
| + | |
| − | *** 221 reaction(s) added
| + | |
| − | * Based on gap-filling:
| + | |
| − | ** Tool: [https://pypi.python.org/pypi/meneco meneco]
| + | |
| − | *** 120 reaction(s) added
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| − | [[FILE:venn.png|frameless|border]]
| + | == Reactions associated == |
| − | | + | * [[PTRCabc]] |
| − | == Collaborative curation == | + | ** [[pantograph]]-[[l_plantarum_wcfs1]] |
| − | * Suggest reactions to add or remove: | + | * [[SPMDabc]] |
| − | ** Download this [[MEDIA:Add_delete_reaction.csv|from]] | + | ** [[pantograph]]-[[l_plantarum_wcfs1]] |
| − | * Suggest new reactions to create and add: | + | == Pathways associated == |
| − | ** Download this [[MEDIA:Reaction_creator.csv|form]] | + | == External links == |
| − | * '''Follow the examples given in the form to correctly share your suggestions'''
| + | {{#set: reaction associated=PTRCabc|SPMDabc}} |
| − | * Send the completed form(s) to: CONTACT_MAIL
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