Difference between revisions of "2ameph"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00920 map00920] == * common_name: ** Sulfur metabolism * Synonym(s): == Reaction(s) found == * '''...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DXPS DXPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-D-xylulose 5-phosphate syntha...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00920 map00920] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DXPS DXPS] ==
−
* common_name:
+
* direction:
−
** Sulfur metabolism
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** 1-deoxy-D-xylulose 5-phosphate synthase
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
* '''5''' reaction(s) found
+
* With identifiers:
−
** [[SERAT]]
+
** 1.0 [[pyr]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[g3p]][c] '''=>''' 1.0 [[dxyl5p]][c] '''+''' 1.0 [[co2]][c]
−
** [[SHSL1]]
+
* With common name(s):
−
** [[CYSS]]
+
** 1.0 Pyruvate[c] '''+''' 1.0 H+[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c] '''=>''' 1.0 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1.0 CO2 CO2[c]
−
** [[CYANST]]
+
 
−
** [[SLCYSS]]
+
== Genes associated with this reaction  ==
−
== Reaction(s) not found ==
+
Genes have been associated with this reaction based on different elements listed below.
−
* '''51''' reaction(s) not found
+
* [[EF1659]]
−
** [http://bigg.ucsd.edu/universal/reactions/TSULtm TSULtm]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** [http://bigg.ucsd.edu/universal/reactions/ACHMSSELCYSL ACHMSSELCYSL]
+
* [[EF1354]]
−
** [http://bigg.ucsd.edu/universal/reactions/TSULth TSULth]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** [http://bigg.ucsd.edu/universal/reactions/METB1 METB1]
+
== Pathways  ==
−
** [http://bigg.ucsd.edu/universal/reactions/TAUDO TAUDO]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** [http://bigg.ucsd.edu/universal/reactions/TSULabc TSULabc]
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
** [http://bigg.ucsd.edu/universal/reactions/ACSERSULL ACSERSULL]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** [http://bigg.ucsd.edu/universal/reactions/ACSERLm ACSERLm]
+
** '''135''' reactions found over '''694''' reactions in the full pathway
−
** [http://bigg.ucsd.edu/universal/reactions/SHSL1h SHSL1h]
+
* [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730]
−
** [http://bigg.ucsd.edu/universal/reactions/ACSERLh ACSERLh]
+
** '''11''' reactions found over '''24''' reactions in the full pathway
−
** [http://bigg.ucsd.edu/universal/reactions/SUCHMSSELCYSL SUCHMSSELCYSL]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** [http://bigg.ucsd.edu/universal/reactions/PAPSR PAPSR]
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
−
** [http://bigg.ucsd.edu/universal/reactions/ADSK ADSK]
+
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
−
** [http://bigg.ucsd.edu/universal/reactions/AHSL AHSL]
+
** '''14''' reactions found over '''67''' reactions in the full pathway
−
** [http://bigg.ucsd.edu/universal/reactions/TSULabcpp TSULabcpp]
+
== Reconstruction information  ==
−
** [http://bigg.ucsd.edu/universal/reactions/AASPh AASPh]
+
* [[orthology]]:
−
** [http://bigg.ucsd.edu/universal/reactions/CYANSTm CYANSTm]
+
** [[pantograph]]:
−
** [http://bigg.ucsd.edu/universal/reactions/AASPm AASPm]
+
*** [[e_coli_sstr_k12_substr_mg1655]]
−
** [http://bigg.ucsd.edu/universal/reactions/FDMO FDMO]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SUCHMSSELCYSLh SUCHMSSELCYSLh]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SHSL2h SHSL2h]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SULOm SULOm]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SELADT SELADT]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SULabcpp SULabcpp]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SHSL2r SHSL2r]
+
−
** [http://bigg.ucsd.edu/universal/reactions/ACHMSSELCYSLh ACHMSSELCYSLh]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SAT SAT]
+
−
** [http://bigg.ucsd.edu/universal/reactions/HSST HSST]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SADT2 SADT2]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SULR SULR]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SLFAT SLFAT]
+
−
** [http://bigg.ucsd.edu/universal/reactions/CYANSTpp CYANSTpp]
+
−
** [http://bigg.ucsd.edu/universal/reactions/FDMO2 FDMO2]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SULO SULO]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SADT SADT]
+
−
** [http://bigg.ucsd.edu/universal/reactions/TAURabcpp TAURabcpp]
+
−
** [http://bigg.ucsd.edu/universal/reactions/ADSELK ADSELK]
+
−
** [http://bigg.ucsd.edu/universal/reactions/FDMO4 FDMO4]
+
−
** [http://bigg.ucsd.edu/universal/reactions/PAPSSH PAPSSH]
+
−
** [http://bigg.ucsd.edu/universal/reactions/TAURabc TAURabc]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SATm SATm]
+
−
** [http://bigg.ucsd.edu/universal/reactions/PAPSR2 PAPSR2]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SULFOX SULFOX]
+
−
** [http://bigg.ucsd.edu/universal/reactions/CYSS_1 CYSS_1]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SO3R SO3R]
+
−
** [http://bigg.ucsd.edu/universal/reactions/BPNT2 BPNT2]
+
−
** [http://bigg.ucsd.edu/universal/reactions/ACSERSULLh ACSERSULLh]
+
−
** [http://bigg.ucsd.edu/universal/reactions/BPNT BPNT]
+
−
** [http://bigg.ucsd.edu/universal/reactions/ACSERSULLm ACSERSULLm]
+
−
** [http://bigg.ucsd.edu/universal/reactions/ACSERL ACSERL]
+
−
** [http://bigg.ucsd.edu/universal/reactions/SULabc SULabc]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Sulfur metabolism}}
+
* RHEA:
−
{{#set: reaction found=5}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
−
{{#set: reaction not found=51}}
+
* BioCyc : META:DXS-RXN
 +
* MetaNetX (MNX) Equation : MNXR97831
 +
* KEGG Reaction : R05636
 +
* EC Number : 2.2.1.7
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=1-deoxy-D-xylulose 5-phosphate synthase}}
 +
{{#set: gene associated=EF1659|EF1354}}
 +
{{#set: in pathway=map01100|map01130|map00730|map01110|map00900}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}

Revision as of 16:35, 10 January 2018

Reaction DXPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-deoxy-D-xylulose 5-phosphate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Pyruvate[c] + 1.0 H+[c] + 1.0 Glyceraldehyde 3-phosphate[c] => 1.0 1-deoxy-D-xylulose 5-phosphate[c] + 1.0 CO2 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DXS-RXN
  • MetaNetX (MNX) Equation : MNXR97831
  • KEGG Reaction : R05636
  • EC Number : 2.2.1.7




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=2ameph&oldid=2999"