Difference between revisions of "ICITt2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRAIi PRAIi] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoribosylanthranilate isomeras...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GAPD GAPD] == * direction: ** REVERSIBLE * common name: ** Glyceraldehyde-3-phosphate dehydrogenase...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PRAIi PRAIi] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GAPD GAPD] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Phosphoribosylanthranilate isomerase (irreversible)
+
** Glyceraldehyde-3-phosphate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[pran]][c] '''=>''' 1.0 [[2cpr5p]][c]
+
** 1.0 [[g3p]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[nad]][c] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[13dpg]][c] '''+''' 1.0 [[nadh]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 N-(5-Phospho-D-ribosyl)anthranilate[c] '''=>''' 1.0 1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate[c]
+
** 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''<=>''' 1.0 H+[c] '''+''' 1.0 3-Phospho-D-glyceroyl phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[EF1526]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF1964]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''156''' reactions found over '''694''' reactions in the full pathway
+
−
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
+
−
** '''21''' reactions found over '''59''' reactions in the full pathway
+
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
−
** '''83''' reactions found over '''228''' reactions in the full pathway
+
** '''56''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 +
** '''24''' reactions found over '''149''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''16''' reactions found over '''71''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* [[orthology]]:
−
** [[meneco]]:
+
** [[pantograph]]:
−
*** [[added for gapfilling]]
+
*** [[e_coli_sstr_k12_substr_mg1655]]
 +
*** [[l_plantarum_wcfs1]]
 +
*** [[b_subtilis_subsp_subtilis_str168]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21540 21540]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10300 10300]
−
* EC Number : 5.3.1.24
+
* BioCyc : META:GAPOXNPHOSPHN-RXN
−
* MetaNetX (MNX) Equation : MNXR103156
+
* MetaNetX (MNX) Equation : MNXR100040
−
* KEGG Reaction : R03509
+
* KEGG Reaction : R01061
−
* BioCyc : META:PRAISOM-RXN
+
* EC Number : 1.2.1.12
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Phosphoribosylanthranilate isomerase (irreversible)}}
+
{{#set: common name=Glyceraldehyde-3-phosphate dehydrogenase}}
−
{{#set: in pathway=map01100|map01130|map00400|map01110|map01230}}
+
{{#set: gene associated=EF1526|EF1964}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map01100|map01110|map01120|map01200|map01230|map00010|map00710|map01130}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}

Revision as of 15:47, 10 January 2018

Reaction GAPD

  • direction:
    • REVERSIBLE
  • common name:
    • Glyceraldehyde-3-phosphate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Glyceraldehyde 3-phosphate[c] + 1.0 Phosphate[c] + 1.0 Nicotinamide adenine dinucleotide[c] <=> 1.0 H+[c] + 1.0 3-Phospho-D-glyceroyl phosphate[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:GAPOXNPHOSPHN-RXN
  • MetaNetX (MNX) Equation : MNXR100040
  • KEGG Reaction : R01061
  • EC Number : 1.2.1.12




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