Difference between revisions of "EF2496"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDC GLUDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamate Decarboxylase * Synonym(s...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK1 NDPK1] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:GDP...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDC GLUDC] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK1 NDPK1] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Glutamate Decarboxylase
+
** Nucleoside-diphosphate kinase (ATP:GDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[glu__L]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[4abut]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[gdp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[gtp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Glutamate[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 4-Aminobutanoate[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 GDP C10H12N5O11P2[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 GTP C10H12N5O14P3[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[EF1036]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF0228]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''111''' reactions found over '''715''' reactions in the full pathway
+
** '''82''' reactions found over '''244''' reactions in the full pathway
−
* [[map00430]]: [http://www.genome.jp/dbget-bin/www_bget?map00430 map00430]
+
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
−
** '''5''' reactions found over '''24''' reactions in the full pathway
+
** '''97''' reactions found over '''298''' reactions in the full pathway
−
* [[map00650]]: [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650]
+
−
** '''14''' reactions found over '''156''' reactions in the full pathway
+
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
−
** '''27''' reactions found over '''93''' reactions in the full pathway
+
−
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
+
−
** '''8''' reactions found over '''91''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* [[orthology]]:
−
** [[meneco]]:
+
** [[pantograph]]:
−
*** [[added for gapfilling]]
+
*** [[e_coli_sstr_k12_substr_mg1655]]
 +
*** [[l_plantarum_wcfs1]]
 +
*** [[b_subtilis_subsp_subtilis_str168]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17785 17785]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27686 27686]
−
* EC Number : 4.1.1.15
+
* BioCyc : META:GDPKIN-RXN
−
* MetaNetX (MNX) Equation : MNXR95942
+
* MetaNetX (MNX) Equation : MNXR96119
−
* KEGG Reaction : R00261
+
* KEGG Reaction : R00330
−
* BioCyc : META:GLUTDECARBOX-RXN
+
* EC Number : 2.7.4.6
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Glutamate Decarboxylase}}
+
{{#set: common name=Nucleoside-diphosphate kinase (ATP:GDP)}}
−
{{#set: in pathway=map01100|map01110|map01120|map00430|map00650|map00250|map00410}}
+
{{#set: gene associated=EF1036|EF0228}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map01100|map01130|map01110|map00240|map00230}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}

Revision as of 16:58, 10 January 2018

Reaction NDPK1

  • direction:
    • REVERSIBLE
  • common name:
    • Nucleoside-diphosphate kinase (ATP:GDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 GDP C10H12N5O11P2[c] <=> 1.0 ADP C10H12N5O10P2[c] + 1.0 GTP C10H12N5O14P3[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:GDPKIN-RXN
  • MetaNetX (MNX) Equation : MNXR96119
  • KEGG Reaction : R00330
  • EC Number : 2.7.4.6




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