Difference between revisions of "Dhptd"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UAAGDS UAAGDS] == * direction: ** LEFT-TO-RIGHT * common name: ** UDP-N-acetylmuramoyl-L-alanyl-D-g...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NADH5 NADH5] == * direction: ** LEFT-TO-RIGHT * common name: ** NADH dehydrogenase (ubiquinone-8 )...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/UAAGDS UAAGDS] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/NADH5 NADH5] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase
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** NADH dehydrogenase (ubiquinone-8 )
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[26dap__M]][c] '''+''' 1.0 [[uamag]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[ugmd]][c]
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** 1.0 [[q8]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[nad]][c] '''+''' 1.0 [[q8h2]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Meso-2,6-Diaminoheptanedioate[c] '''+''' 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate[c]
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** 1.0 Ubiquinone-8[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Ubiquinol-8[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF0668]]
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* [[EF2055]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
* [[EF3257]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
 
** '''10''' reactions found over '''27''' reactions in the full pathway
 
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
 
** '''13''' reactions found over '''34''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[e_coli_sstr_k12_substr_mg1655]]
 
*** [[e_coli_sstr_k12_substr_mg1655]]
*** [[l_plantarum_wcfs1]]
 
*** [[b_subtilis_subsp_subtilis_str168]]
 
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR105013
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* RHEA:
* EC Number : 6.3.2.13
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29107 29107]
 +
* MetaNetX (MNX) Equation : MNXR101872
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase}}
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{{#set: common name=NADH dehydrogenase (ubiquinone-8 )}}
{{#set: gene associated=EF0668}}
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{{#set: gene associated=EF2055|EF3257}}
{{#set: in pathway=map00550|map00300}}
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{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
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{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}

Revision as of 16:03, 10 January 2018

Reaction NADH5

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • NADH dehydrogenase (ubiquinone-8 )
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Ubiquinone-8[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 H+[c] => 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 Ubiquinol-8[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR101872