Difference between revisions of "Trnasecys"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PHETRS PHETRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Phenylalanyl-tRNA synthetase * Sy...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GCALDD GCALDD] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycolaldehyde dehydrogenase * Sy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PHETRS PHETRS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GCALDD GCALDD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phenylalanyl-tRNA synthetase
+
** Glycolaldehyde dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[phe__L]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[trnaphe]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[phetrna]][c] '''+''' 1.0 [[amp]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[gcald]][c] '''=>''' 2.0 [[h]][c] '''+''' 1.0 [[glyclt]][c] '''+''' 1.0 [[nadh]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Phenylalanine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 TRNA(Phe)[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 L-Phenylalanyl-tRNA(Phe)[c] '''+''' 1.0 AMP C10H12N5O7P[c]
+
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Glycolaldehyde[c] '''=>''' 2.0 H+[c] '''+''' 1.0 Glycolate C2H3O3[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1116]]
+
* [[EF0253]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
* [[EF1115]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
+
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
−
** '''23''' reactions found over '''49''' reactions in the full pathway
+
** '''21''' reactions found over '''129''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** [[b_subtilis_subsp_subtilis_str168]]
−
*** [[l_plantarum_wcfs1]]
+
 
== External links  ==
 
== External links  ==
−
* Reactome : REACT_R-HSA-379848
+
* RHEA:
−
* MetaNetX (MNX) Equation : MNXR102634
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20001 20001]
−
* KEGG Reaction : R03660
+
* BioCyc : META:GLYCOLALD-DEHYDROG-RXN
−
* EC Number : 6.1.1.20
+
* MetaNetX (MNX) Equation : MNXR100060
 +
* KEGG Reaction : R01333
 +
* EC Number : 1.2.1.21
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Phenylalanyl-tRNA synthetase}}
+
{{#set: common name=Glycolaldehyde dehydrogenase}}
−
{{#set: gene associated=EF1116|EF1115}}
+
{{#set: gene associated=EF0253}}
−
{{#set: in pathway=map00970}}
+
{{#set: in pathway=map00630|map01120}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
+
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}

Revision as of 16:06, 10 January 2018

Reaction GCALDD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycolaldehyde dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 H2O H2O[c] + 1.0 Glycolaldehyde[c] => 2.0 H+[c] + 1.0 Glycolate C2H3O3[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:GLYCOLALD-DEHYDROG-RXN
  • MetaNetX (MNX) Equation : MNXR100060
  • KEGG Reaction : R01333
  • EC Number : 1.2.1.21




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