Difference between revisions of "TransportSeed ribflv"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CITt12 CITt12] == * direction: ** LEFT-TO-RIGHT * common name: ** Citrate transport in via Ni compl...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PYK PYK] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyruvate kinase * Synonym(s): == React...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/CITt12 CITt12] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PYK PYK] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Citrate transport in via Ni complex
+
** Pyruvate kinase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[cit]][e] '''+''' 1.0 [[h]][e] '''+''' 1.0 [[ni2]][e] '''=>''' 1.0 [[ni2]][c] '''+''' 1.0 [[cit]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[adp]][c] '''+''' 1.0 [[pep]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[pyr]][c] '''+''' 1.0 [[atp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Citrate[e] '''+''' 1.0 H+[e] '''+''' 1.0 Nickel[e] '''=>''' 1.0 Nickel[c] '''+''' 1.0 Citrate[c] '''+''' 1.0 H+[c]
+
** 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Phosphoenolpyruvate[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Pyruvate[c] '''+''' 1.0 ATP C10H12N5O13P3[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF3327]]
+
* [[EF1046]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 +
** '''24''' reactions found over '''149''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''31''' reactions found over '''163''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[e_coli_sstr_k12_substr_mg1655]]
 +
*** [[l_plantarum_wcfs1]]
 
*** [[b_subtilis_subsp_subtilis_str168]]
 
*** [[b_subtilis_subsp_subtilis_str168]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR96742
+
* EC Number : 2.7.1.40
 +
* BioCyc : META:PEPDEPHOS-RXN
 +
* MetaNetX (MNX) Equation : MNXR103371
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18157 18157]
 +
* Reactome : REACT_R-ATH-71670
 +
* KEGG Reaction : R00200
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Citrate transport in via Ni complex}}
+
{{#set: common name=Pyruvate kinase}}
−
{{#set: gene associated=EF3327}}
+
{{#set: gene associated=EF1046}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map01100|map01110|map00230|map01120|map01200|map01230|map00010|map00620|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}

Revision as of 16:14, 10 January 2018

Reaction PYK

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyruvate kinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ADP C10H12N5O10P2[c] + 1.0 Phosphoenolpyruvate[c] + 1.0 H+[c] => 1.0 Pyruvate[c] + 1.0 ATP C10H12N5O13P3[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 2.7.1.40
  • BioCyc : META:PEPDEPHOS-RXN
  • MetaNetX (MNX) Equation : MNXR103371
  • RHEA:
  • Reactome : REACT_R-ATH-71670
  • KEGG Reaction : R00200




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