Difference between revisions of "OCMAT3 manual"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_cit ExchangeSeed_cit] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/XTSNH XTSNH] == * direction: ** LEFT-TO-RIGHT * common name: ** Xanthosine hydrolase * Synonym(s):...") |
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| Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/XTSNH XTSNH] == |
* direction: | * direction: | ||
| − | ** | + | ** LEFT-TO-RIGHT |
| + | * common name: | ||
| + | ** Xanthosine hydrolase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1.0 [[ | + | ** 1.0 [[xtsn]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[xan]][c] '''+''' 1.0 [[rib__D]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1.0 | + | ** 1.0 Xanthosine[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Xanthine[c] '''+''' 1.0 D-Ribose[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * [[EF2587]] | ||
| + | ** [[pantograph]]-[[l_plantarum_wcfs1]] | ||
| + | * [[EF1921]] | ||
| + | ** [[pantograph]]-[[l_plantarum_wcfs1]] | ||
| + | ** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]] | ||
== Pathways == | == Pathways == | ||
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
| + | ** '''460''' reactions found over '''2349''' reactions in the full pathway | ||
| + | * [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230] | ||
| + | ** '''97''' reactions found over '''298''' reactions in the full pathway | ||
| + | * [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760] | ||
| + | ** '''19''' reactions found over '''97''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[ | + | * [[orthology]]: |
| − | ** [[ | + | ** [[pantograph]]: |
| + | *** [[e_coli_sstr_k12_substr_mg1655]] | ||
| + | *** [[l_plantarum_wcfs1]] | ||
== External links == | == External links == | ||
| − | {{#set: direction= | + | * RHEA: |
| − | {{#set: in pathway=}} | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27994 27994] |
| − | {{#set: reconstruction category= | + | * BioCyc : META:RXN0-363 |
| − | {{#set: reconstruction source= | + | * MetaNetX (MNX) Equation : MNXR105245 |
| + | * KEGG Reaction : R02143 | ||
| + | * EC Number : 3.2.2.1 | ||
| + | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: common name=Xanthosine hydrolase}} | ||
| + | {{#set: gene associated=EF2587|EF1921}} | ||
| + | {{#set: in pathway=map01100|map00230|map00760}} | ||
| + | {{#set: reconstruction category=orthology}} | ||
| + | {{#set: reconstruction tool=pantograph}} | ||
| + | {{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}} | ||
Revision as of 16:16, 10 January 2018
Contents
Reaction XTSNH
- direction:
- LEFT-TO-RIGHT
- common name:
- Xanthosine hydrolase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 Xanthosine[c] + 1.0 H2O H2O[c] => 1.0 Xanthine[c] + 1.0 D-Ribose[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
Pathways
- map01100: map01100
- 460 reactions found over 2349 reactions in the full pathway
- map00230: map00230
- 97 reactions found over 298 reactions in the full pathway
- map00760: map00760
- 19 reactions found over 97 reactions in the full pathway
Reconstruction information
External links
- RHEA:
- BioCyc : META:RXN0-363
- MetaNetX (MNX) Equation : MNXR105245
- KEGG Reaction : R02143
- EC Number : 3.2.2.1
