Difference between revisions of "MNLpts"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYSTRS LYSTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Lysyl-tRNA synthetase * Synonym(s...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK6 NDPK6] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:dUD...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/LYSTRS LYSTRS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK6 NDPK6] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Lysyl-tRNA synthetase
+
** Nucleoside-diphosphate kinase (ATP:dUDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[trnalys]][c] '''+''' 1.0 [[lys__L]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[lystrna]][c] '''+''' 1.0 [[amp]][c]
+
** 1.0 [[dudp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[dutp]][c] '''+''' 1.0 [[adp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 TRNA(Lys)[c] '''+''' 1.0 L-Lysine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 L-Lysine-tRNA (Lys)[c] '''+''' 1.0 AMP C10H12N5O7P[c]
+
** 1.0 DUDP C9H11N2O11P2[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 DUTP C9H11N2O14P3[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0268]]
+
* [[EF1036]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF0228]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''23''' reactions found over '''49''' reactions in the full pathway
+
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
Line 26: Line 37:
 
*** [[e_coli_sstr_k12_substr_mg1655]]
 
*** [[e_coli_sstr_k12_substr_mg1655]]
 
*** [[l_plantarum_wcfs1]]
 
*** [[l_plantarum_wcfs1]]
 +
*** [[b_subtilis_subsp_subtilis_str168]]
 
== External links  ==
 
== External links  ==
−
* Reactome : REACT_R-HSA-380008
+
* RHEA:
−
* MetaNetX (MNX) Equation : MNXR101264
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28582 28582]
−
* KEGG Reaction : R03658
+
* BioCyc : META:DUDPKIN-RXN
−
* EC Number : 6.1.1.6
+
* MetaNetX (MNX) Equation : MNXR101938
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* KEGG Reaction : R02331
−
{{#set: common name=Lysyl-tRNA synthetase}}
+
* EC Number : 2.7.4.6
−
{{#set: gene associated=EF0268}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: in pathway=map00970}}
+
{{#set: common name=Nucleoside-diphosphate kinase (ATP:dUDP)}}
 +
{{#set: gene associated=EF1036|EF0228}}
 +
{{#set: in pathway=map00240|map01100|map01110|map00230|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
+
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}

Revision as of 16:18, 10 January 2018

Reaction NDPK6

  • direction:
    • REVERSIBLE
  • common name:
    • Nucleoside-diphosphate kinase (ATP:dUDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 DUDP C9H11N2O11P2[c] + 1.0 ATP C10H12N5O13P3[c] <=> 1.0 DUTP C9H11N2O14P3[c] + 1.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DUDPKIN-RXN
  • MetaNetX (MNX) Equation : MNXR101938
  • KEGG Reaction : R02331
  • EC Number : 2.7.4.6




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