Difference between revisions of "Manual-4 newreactions"
From metabolic_network
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Model summary: [[MEDIA:efaecalisV583_final.txt|summary]] | Model summary: [[MEDIA:efaecalisV583_final.txt|summary]] | ||
| − | Download '''AuReMe''' Input/Output [https://mybox.inria.fr data] | + | Download '''AuReMe''' Input/Output [https://mybox.inria.fr/f/6e73f7ad41/?raw=1 data] |
The automatic reconstruction of ''Enterococcus_faecalis_str_v583'' results to a Genome scale [[MEDIA:efaecalisV583_final_lvl3.xml|Model]] containing 1117 reactions, 911 metabolites, 610 genes and 106 pathways. This GeM was obtained based on the following sources: | The automatic reconstruction of ''Enterococcus_faecalis_str_v583'' results to a Genome scale [[MEDIA:efaecalisV583_final_lvl3.xml|Model]] containing 1117 reactions, 911 metabolites, 610 genes and 106 pathways. This GeM was obtained based on the following sources: | ||
Revision as of 14:23, 12 January 2018
EFAEV583GEM description
Automatic reconstruction with AuReMe
Model summary: summary
Download AuReMe Input/Output data
The automatic reconstruction of Enterococcus_faecalis_str_v583 results to a Genome scale Model containing 1117 reactions, 911 metabolites, 610 genes and 106 pathways. This GeM was obtained based on the following sources:
- Based on orthology data:
- Tool: Pantograph
- From template E_COLI_SSTR_K12_SUBSTR_MG1655 creation of a metabolic network containing: 528 reactions
- From template L_PLANTARUM_WCFS1 creation of a metabolic network containing: 385 reactions
- From template B_SUBTILIS_SUBSP_SUBTILIS_STR168 creation of a metabolic network containing: 463 reactions
- Tool: Pantograph
- Based on expertise:
- 221 reaction(s) added
- Based on gap-filling:
- Tool: meneco
- 50 reaction(s) added
- Tool: meneco
