Difference between revisions of "Acgal"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS140 3OAS140] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-[acyl-carrier-protein...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDK1 TMDK1] == * direction: ** LEFT-TO-RIGHT * common name: ** Thymidine kinase (ATP:thymidine) *...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS140 3OAS140] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TMDK1 TMDK1] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:0)
+
** Thymidine kinase (ATP:thymidine)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h]][c] '''+''' 1.0 [[ddcaACP]][c] '''+''' 1.0 [[malACP]][c] '''=>''' 1.0 [[ACP]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[3omrsACP]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[thymd]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[dtmp]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H+[c] '''+''' 1.0 Dodecanoyl-ACP (n-C12:0ACP)[c] '''+''' 1.0 Malonyl-[acyl-carrier protein][c] '''=>''' 1.0 Acyl carrier protein[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 3-Oxotetradecanoyl-[acyl-carrier protein][c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Thymidine C10H14N2O5[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 DTMP C10H13N2O8P[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2880]]
+
* [[EF2555]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
* [[EF0283]]
+
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''36''' reactions found over '''182''' reactions in the full pathway
+
** '''82''' reactions found over '''244''' reactions in the full pathway
−
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
+
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
−
** '''65''' reactions found over '''160''' reactions in the full pathway
+
** '''22''' reactions found over '''72''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR94957
+
* EC Number : 2.7.1.145
−
* EC Number : 2.3.1.86
+
* BioCyc : META:THYKI-RXN
 +
* MetaNetX (MNX) Equation : MNXR104885
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19129 19129]
 +
* Reactome : REACT_R-ATH-73632
 +
* KEGG Reaction : R01567
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:0)}}
+
{{#set: common name=Thymidine kinase (ATP:thymidine)}}
−
{{#set: gene associated=EF2880|EF0283}}
+
{{#set: gene associated=EF2555}}
−
{{#set: in pathway=map01100|map01212|map00061}}
+
{{#set: in pathway=map01100|map00240|map00983}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
 

Revision as of 18:31, 18 March 2018

Reaction TMDK1

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Thymidine kinase (ATP:thymidine)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 Thymidine C10H14N2O5[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 DTMP C10H13N2O8P[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 2.7.1.145
  • BioCyc : META:THYKI-RXN
  • MetaNetX (MNX) Equation : MNXR104885
  • RHEA:
  • Reactome : REACT_R-ATH-73632
  • KEGG Reaction : R01567




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