Difference between revisions of "Pyam5p"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ORNDC ORNDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Ornithine Decarboxylase * Synonym(s...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GALURt2r GALURt2r] == * direction: ** REVERSIBLE * common name: ** D-galacturonate transport via pr...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ORNDC ORNDC] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GALURt2r GALURt2r] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Ornithine Decarboxylase
+
** D-galacturonate transport via proton symport, reversible
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[orn]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[ptrc]][c]
+
** 1.0 [[galur]][e] '''+''' 1.0 [[h]][e] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[galur]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Ornithine[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Putrescine[c]
+
** 1.0 D-Galacturonate[e] '''+''' 1.0 H+[e] '''<=>''' 1.0 H+[c] '''+''' 1.0 D-Galacturonate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[EF0385]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF2992]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
 
−
** '''10''' reactions found over '''39''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
 
−
** '''22''' reactions found over '''149''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 4.1.1.17
+
* MetaNetX (MNX) Equation : MNXR100020
−
* BioCyc : META:ORNDECARBOX-RXN
+
{{#set: direction=REVERSIBLE}}
−
* MetaNetX (MNX) Equation : MNXR102209
+
{{#set: common name=D-galacturonate transport via proton symport, reversible}}
−
* RHEA:
+
{{#set: gene associated=EF0385|EF2992}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22964 22964]
+
{{#set: in pathway=}}
−
* Reactome : REACT_R-ATH-70692
+
{{#set: reconstruction category=orthology}}
−
* KEGG Reaction : R00670
+
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: common name=Ornithine Decarboxylase}}
+
−
{{#set: in pathway=map01100|map01130|map00480|map01110|map00330}}
+
−
{{#set: reconstruction category=gap-filling}}
+
−
{{#set: reconstruction tool=meneco}}
+
−
{{#set: reconstruction source=added for gapfilling}}
+

Revision as of 18:32, 18 March 2018

Reaction GALURt2r

  • direction:
    • REVERSIBLE
  • common name:
    • D-galacturonate transport via proton symport, reversible
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Galacturonate[e] + 1.0 H+[e] <=> 1.0 H+[c] + 1.0 D-Galacturonate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR100020




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