Difference between revisions of "SDPDS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/AICART AICART] == * direction: ** REVERSIBLE * common name: ** Phosphoribosylaminoimidazolecarboxam...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TransportSeed_pydx5p TransportSeed_pydx5p] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == React...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/AICART AICART] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/TransportSeed_pydx5p TransportSeed_pydx5p] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
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** LEFT-TO-RIGHT
−
* common name:
+
−
** Phosphoribosylaminoimidazolecarboxamide formyltransferase
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[aicar]][c] '''+''' 1.0 [[10fthf]][c] '''<=>''' 1.0 [[thf]][c] '''+''' 1.0 [[fprica]][c]
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** 1.0 [[pydx5p]][e] '''=>''' 1.0 [[pydx5p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide[c] '''+''' 1.0 10-Formyltetrahydrofolate[c] '''<=>''' 1.0 5,6,7,8-Tetrahydrofolate[c] '''+''' 1.0 5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide[c]
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** 1.0 Pyridoxal 5'-phosphate[e] '''=>''' 1.0 Pyridoxal 5'-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF1778]]
 
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** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
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** '''460''' reactions found over '''2349''' reactions in the full pathway
 
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
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** '''135''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
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* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
 
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** '''14''' reactions found over '''65''' reactions in the full pathway
 
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''97''' reactions found over '''298''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-import_from_medium]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[added to manage seeds from extracellular to cytosol compartment]]
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*** [[l_plantarum_wcfs1]]
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−
*** [[b_subtilis_subsp_subtilis_str168]]
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== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22192 22192]
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{{#set: in pathway=}}
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* Reactome : REACT_R-ATH-73798
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{{#set: reconstruction category=manual}}
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* MetaNetX (MNX) Equation : MNXR95639
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{{#set: reconstruction source=manual-import_from_medium}}
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* KEGG Reaction : R04560
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
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* EC Number : 2.1.2.3
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−
{{#set: direction=REVERSIBLE}}
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−
{{#set: common name=Phosphoribosylaminoimidazolecarboxamide formyltransferase}}
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−
{{#set: gene associated=EF1778}}
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−
{{#set: in pathway=map01100|map01130|map01110|map00670|map00230}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Revision as of 18:35, 18 March 2018

Reaction TransportSeed_pydx5p

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Pyridoxal 5'-phosphate[e] => 1.0 Pyridoxal 5'-phosphate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

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