Difference between revisions of "EF2901"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACM6PH ACM6PH] == * direction: ** LEFT-TO-RIGHT * common name: ** N-acetylmuramate 6-phosphate hydr...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DAPDC DAPDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Diaminopimelate decarboxylase * Syn...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ACM6PH ACM6PH] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DAPDC DAPDC] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** N-acetylmuramate 6-phosphate hydrolase
+
** Diaminopimelate decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[acmum6p]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[lac__D]][c] '''+''' 1.0 [[acgam6p]][c]
+
** 1.0 [[h]][c] '''+''' 1.0 [[26dap__M]][c] '''=>''' 1.0 [[lys__L]][c] '''+''' 1.0 [[co2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 N-acetylmuramate 6-phosphate[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 D-Lactate[c] '''+''' 1.0 N-Acetyl-D-glucosamine 6-phosphate[c]
+
** 1.0 H+[c] '''+''' 1.0 Meso-2,6-Diaminoheptanedioate[c] '''=>''' 1.0 L-Lysine[c] '''+''' 1.0 CO2 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0459]]
+
* [[EF1504]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00520]]: [http://www.genome.jp/dbget-bin/www_bget?map00520 map00520]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''24''' reactions found over '''80''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
 +
** '''13''' reactions found over '''34''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26410 26410]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
−
* MetaNetX (MNX) Equation : MNXR95273
+
* BioCyc : META:DIAMINOPIMDECARB-RXN
−
* KEGG Reaction : R08555
+
* MetaNetX (MNX) Equation : MNXR97141
−
* EC Number : 4.2.1.126
+
* KEGG Reaction : R00451
 +
* EC Number : 4.1.1.20
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=N-acetylmuramate 6-phosphate hydrolase}}
+
{{#set: common name=Diaminopimelate decarboxylase}}
−
{{#set: gene associated=EF0459}}
+
{{#set: gene associated=EF1504}}
−
{{#set: in pathway=map01100|map00520}}
+
{{#set: in pathway=map01100|map01110|map00300|map01120|map01230|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Revision as of 19:35, 18 March 2018

Reaction DAPDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Diaminopimelate decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 Meso-2,6-Diaminoheptanedioate[c] => 1.0 L-Lysine[c] + 1.0 CO2 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DIAMINOPIMDECARB-RXN
  • MetaNetX (MNX) Equation : MNXR97141
  • KEGG Reaction : R00451
  • EC Number : 4.1.1.20




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