Difference between revisions of "EF0192"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PMPK PMPK] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphomethylpyrimidine kinase * Syno...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PC PC] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyruvate carboxylase * Synonym(s): == Re...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PMPK PMPK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PC PC] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phosphomethylpyrimidine kinase
+
** Pyruvate carboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[4ampm]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[2mahmp]][c] '''+''' 1.0 [[adp]][c]
+
** 1.0 [[hco3]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[pyr]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[oaa]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 4-Amino-2-methyl-5-phosphomethylpyrimidine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
+
** 1.0 Bicarbonate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Pyruvate[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Oxaloacetate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2775]]
+
* [[EF2456]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
−
* [[EF0202]]
 
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730]
 
−
** '''11''' reactions found over '''24''' reactions in the full pathway
 
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
 +
** '''14''' reactions found over '''157''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''31''' reactions found over '''163''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
 +
** '''4''' reactions found over '''70''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19893 19893]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20844 20844]
−
* BioCyc : META:PYRIMSYN3-RXN
+
* BioCyc : META:PYRUVATE-CARBOXYLASE-RXN
−
* MetaNetX (MNX) Equation : MNXR103045
+
* MetaNetX (MNX) Equation : MNXR102391
−
* KEGG Reaction : R04509
+
* KEGG Reaction : R00344
−
* EC Number : 2.7.4.7
+
* EC Number : 6.4.1.1
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Phosphomethylpyrimidine kinase}}
+
{{#set: common name=Pyruvate carboxylase}}
−
{{#set: gene associated=EF2775|EF0202}}
+
{{#set: gene associated=EF2456}}
−
{{#set: in pathway=map00730|map01100}}
+
{{#set: in pathway=map01100|map00720|map01120|map01200|map00620|map01230|map00020}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 18:36, 18 March 2018

Reaction PC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyruvate carboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Bicarbonate[c] + 1.0 ATP C10H12N5O13P3[c] + 1.0 Pyruvate[c] => 1.0 Phosphate[c] + 1.0 H+[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 Oxaloacetate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:PYRUVATE-CARBOXYLASE-RXN
  • MetaNetX (MNX) Equation : MNXR102391
  • KEGG Reaction : R00344
  • EC Number : 6.4.1.1




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