Difference between revisions of "N6all26d"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RPE RPE] == * direction: ** REVERSIBLE * common name: ** Ribulose 5-phosphate 3-epimerase * Synonym...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GND GND] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphogluconate dehydrogenase * Synony...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/RPE RPE] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GND GND] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Ribulose 5-phosphate 3-epimerase
+
** Phosphogluconate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ru5p__D]][c] '''<=>''' 1.0 [[xu5p__D]][c]
+
** 1.0 [[nadp]][c] '''+''' 1.0 [[6pgc]][c] '''=>''' 1.0 [[nadph]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[ru5p__D]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 D-Ribulose 5-phosphate[c] '''<=>''' 1.0 D-Xylulose 5-phosphate[c]
+
** 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 6-Phospho-D-gluconate[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 D-Ribulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF3118]]
+
* [[EF3142]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
* [[EF1049]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
 +
** '''10''' reactions found over '''39''' reactions in the full pathway
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
** '''104''' reactions found over '''715''' reactions in the full pathway
 
** '''104''' reactions found over '''715''' reactions in the full pathway
−
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
 
−
** '''15''' reactions found over '''54''' reactions in the full pathway
 
 
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 
** '''45''' reactions found over '''220''' reactions in the full pathway
 
** '''45''' reactions found over '''220''' reactions in the full pathway
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
−
** '''56''' reactions found over '''228''' reactions in the full pathway
 
−
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 
−
** '''16''' reactions found over '''71''' reactions in the full pathway
 
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''135''' reactions found over '''694''' reactions in the full pathway
 
** '''135''' reactions found over '''694''' reactions in the full pathway
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** '''26''' reactions found over '''69''' reactions in the full pathway
 
** '''26''' reactions found over '''69''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 5.1.3.1
+
* EC Number : 1.1.1.351
−
* BioCyc : META:RIBULP3EPIM-RXN
+
* BioCyc : META:RXN-9952
−
* MetaNetX (MNX) Equation : MNXR104083
+
* MetaNetX (MNX) Equation : MNXR100389
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10116 10116]
−
* Reactome : REACT_R-ATH-199803
+
* Reactome : REACT_R-ATH-71299
−
* KEGG Reaction : R01529
+
* KEGG Reaction : R01528
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Ribulose 5-phosphate 3-epimerase}}
+
{{#set: common name=Phosphogluconate dehydrogenase}}
−
{{#set: gene associated=EF3118}}
+
{{#set: gene associated=EF3142|EF1049}}
−
{{#set: in pathway=map01100|map01110|map01120|map00040|map01200|map01230|map00710|map01130|map00030}}
+
{{#set: in pathway=map01100|map00480|map01110|map01120|map01200|map01130|map00030}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 18:36, 18 March 2018

Reaction GND

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phosphogluconate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide phosphate[c] + 1.0 6-Phospho-D-gluconate[c] => 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 1.0 CO2 CO2[c] + 1.0 D-Ribulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.1.1.351
  • BioCyc : META:RXN-9952
  • MetaNetX (MNX) Equation : MNXR100389
  • RHEA:
  • Reactome : REACT_R-ATH-71299
  • KEGG Reaction : R01528




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