Difference between revisions of "13dpg"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PHETA1 PHETA1] == * direction: ** REVERSIBLE * common name: ** Phenylalanine transaminase * Synonym...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/URACPAH URACPAH] == * direction: ** LEFT-TO-RIGHT * common name: ** Peroxyureidoacrylate hydrolase...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PHETA1 PHETA1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/URACPAH URACPAH] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phenylalanine transaminase
+
** Peroxyureidoacrylate hydrolase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[phe__L]][c] '''+''' 1.0 [[akg]][c] '''<=>''' 1.0 [[phpyr]][c] '''+''' 1.0 [[glu__L]][c]
+
** 1.0 [[uracp]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[cbm]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[poaac]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Phenylalanine[c] '''+''' 1.0 2-Oxoglutarate[c] '''<=>''' 1.0 Phenylpyruvate[c] '''+''' 1.0 L-Glutamate[c]
+
** 1.0 Ureidoacrylate peracid[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Carbamate[c] '''+''' 1.0 H+[c] '''+''' 1.0 Peroxyaminoacrylate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF1793]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
 
−
** '''14''' reactions found over '''80''' reactions in the full pathway
 
−
* [[map00960]]: [http://www.genome.jp/dbget-bin/www_bget?map00960 map00960]
 
−
** '''2''' reactions found over '''27''' reactions in the full pathway
 
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
−
** '''56''' reactions found over '''228''' reactions in the full pathway
 
−
* [[map00360]]: [http://www.genome.jp/dbget-bin/www_bget?map00360 map00360]
 
−
** '''7''' reactions found over '''109''' reactions in the full pathway
 
−
* [[map00350]]: [http://www.genome.jp/dbget-bin/www_bget?map00350 map00350]
 
−
** '''9''' reactions found over '''102''' reactions in the full pathway
 
−
* [[map00340]]: [http://www.genome.jp/dbget-bin/www_bget?map00340 map00340]
 
−
** '''6''' reactions found over '''90''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
 
−
** '''13''' reactions found over '''59''' reactions in the full pathway
 
−
* [[map00401]]: [http://www.genome.jp/dbget-bin/www_bget?map00401 map00401]
 
−
** '''2''' reactions found over '''17''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* BioCyc : META:PHEAMINOTRANS-RXN
+
* RHEA:
−
* MetaNetX (MNX) Equation : MNXR102631
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31591 31591]
−
* KEGG Reaction : R00694
+
* EC Number : 3.5.1.110
−
* EC Number : 2.6.1.1
+
* MetaNetX (MNX) Equation : MNXR105143
−
{{#set: direction=REVERSIBLE}}
+
* KEGG Reaction : R09947
−
{{#set: common name=Phenylalanine transaminase}}
+
* BioCyc : META:RXN0-6460
−
{{#set: gene associated=EF1793}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=map01100|map01110|map01210|map00960|map01230|map00360|map00350|map00340|map01130|map00400|map00401}}
+
{{#set: common name=Peroxyureidoacrylate hydrolase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=map00240|map01100}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 19:38, 18 March 2018

Reaction URACPAH

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Peroxyureidoacrylate hydrolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Ureidoacrylate peracid[c] + 1.0 H2O H2O[c] => 1.0 Carbamate[c] + 1.0 H+[c] + 1.0 Peroxyaminoacrylate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 3.5.1.110
  • MetaNetX (MNX) Equation : MNXR105143
  • KEGG Reaction : R09947
  • BioCyc : META:RXN0-6460




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