Difference between revisions of "Crtn"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/KG6PDC KG6PDC] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-keto-L-gulonate 6-phosphate dec...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/URIDK2r_copy2 URIDK2r_copy2] == * direction: ** REVERSIBLE * common name: ** Uridylate kinase (dUMP...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/KG6PDC KG6PDC] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/URIDK2r_copy2 URIDK2r_copy2] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
** 3-keto-L-gulonate 6-phosphate decarboxylase
+
** Uridylate kinase (dUMP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[3dhgulnp]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[xu5p__L]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[dump]][c] '''<=>''' 1.0 [[dudp]][c] '''+''' 1.0 [[adp]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 3-keto-L-gulonate-6-phosphate[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 L-Xylulose 5-phosphate[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 DUMP C9H11N2O8P[c] '''<=>''' 1.0 DUDP C9H11N2O11P2[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF1129]]
+
* [[EF2764]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
 
** '''15''' reactions found over '''54''' reactions in the full pathway
 
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
** '''104''' reactions found over '''715''' reactions in the full pathway
 
* [[map00053]]: [http://www.genome.jp/dbget-bin/www_bget?map00053 map00053]
 
** '''7''' reactions found over '''50''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-curation_from_orthology]]
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: direction=REVERSIBLE}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14353 14353]
+
{{#set: common name=Uridylate kinase (dUMP)}}
* BioCyc : META:RXN0-705
+
{{#set: gene associated=EF2764}}
* MetaNetX (MNX) Equation : MNXR100935
+
{{#set: in pathway=}}
* KEGG Reaction : R07125
+
{{#set: reconstruction category=orthology|manual}}
* EC Number : 4.1.1.85
+
{{#set: reconstruction source=manual-curation_from_orthology|orthology-b_subtilis_subsp_subtilis_str168}}
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=3-keto-L-gulonate 6-phosphate decarboxylase}}
+
{{#set: gene associated=EF1129}}
+
{{#set: in pathway=map01100|map00040|map01120|map00053}}
+
{{#set: reconstruction category=orthology}}
+
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Revision as of 18:39, 18 March 2018

Reaction URIDK2r_copy2

  • direction:
    • REVERSIBLE
  • common name:
    • Uridylate kinase (dUMP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 DUMP C9H11N2O8P[c] <=> 1.0 DUDP C9H11N2O11P2[c] + 1.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links