Difference between revisions of "Iscssh"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GTPCI GTPCI] == * direction: ** LEFT-TO-RIGHT * common name: ** GTP cyclohydrolase I * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NIabc NIabc] == * direction: ** LEFT-TO-RIGHT * common name: ** Nickel transport via ABC system * S...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/GTPCI GTPCI] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/NIabc NIabc] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** GTP cyclohydrolase I
+
** Nickel transport via ABC system
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[gtp]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[ahdt]][c] '''+''' 1.0 [[for]][c] '''+''' 1.0 [[h]][c]
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** 1.0 [[ni2]][e] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[ni2]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 GTP C10H12N5O14P3[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine triphosphate[c] '''+''' 1.0 Formate[c] '''+''' 1.0 H+[c]
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** 1.0 Nickel[e] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Nickel[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF3267]]
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* [[EF1352]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
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** 2_reaction_to_add_delete
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00790]]: [http://www.genome.jp/dbget-bin/www_bget?map00790 map00790]
 
** '''12''' reactions found over '''41''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[manual]]
** [[pantograph]]:
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** Source: [[manual-2_reaction_to_add_delete]]
*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
*** [[l_plantarum_wcfs1]]
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*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
* EC Number : 3.5.4.16
 
* BioCyc : META:GTP-CYCLOHYDRO-I-RXN
 
* MetaNetX (MNX) Equation : MNXR100453
 
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17473 17473]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15557#1 15557#1]
* Reactome : REACT_R-ATH-1474146
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* MetaNetX (MNX) Equation : MNXR101959
* KEGG Reaction : R00424
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* EC Number : 3.6.3.24
 +
* BioCyc : META:3.6.3.24-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=GTP cyclohydrolase I}}
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{{#set: common name=Nickel transport via ABC system}}
{{#set: gene associated=EF3267}}
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{{#set: gene associated=EF1352}}
{{#set: in pathway=map01100|map00790}}
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{{#set: in pathway=}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=manual-2_reaction_to_add_delete}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
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{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}

Revision as of 18:39, 18 March 2018

Reaction NIabc

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Nickel transport via ABC system
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nickel[e] + 1.0 H2O H2O[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 Phosphate[c] + 1.0 H+[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 Nickel[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

  • EF1352
    • 2_reaction_to_add_delete

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR101959
  • EC Number : 3.6.3.24
  • BioCyc : META:3.6.3.24-RXN