Difference between revisions of "Hxdcal"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DKGLCNR1 DKGLCNR1] == * direction: ** LEFT-TO-RIGHT * common name: ** 2,5-diketo-D-gluconate reduct...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PMPK PMPK] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphomethylpyrimidine kinase * Syno...") |
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| Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/PMPK PMPK] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
| − | ** | + | ** Phosphomethylpyrimidine kinase |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1.0 [[ | + | ** 1.0 [[atp]][c] '''+''' 1.0 [[4ampm]][c] '''=>''' 1.0 [[2mahmp]][c] '''+''' 1.0 [[adp]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1.0 | + | ** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 4-Amino-2-methyl-5-phosphomethylpyrimidine[c] '''=>''' 1.0 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * [[EF2775]] |
| − | ** [[pantograph]]-[[ | + | ** [[pantograph]]-[[l_plantarum_wcfs1]] |
| − | + | ||
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]] | ** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]] | ||
| + | ** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ||
| + | * [[EF0202]] | ||
| + | ** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ||
== Pathways == | == Pathways == | ||
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
| + | ** '''460''' reactions found over '''2349''' reactions in the full pathway | ||
| + | * [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730] | ||
| + | ** '''11''' reactions found over '''24''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[orthology]]: | + | * Category: [[orthology]] |
| − | ** [[pantograph]]: | + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-l_plantarum_wcfs1]] | ||
| + | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
| − | * MetaNetX (MNX) Equation : | + | * RHEA: |
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19893 19893] | ||
| + | * BioCyc : META:PYRIMSYN3-RXN | ||
| + | * MetaNetX (MNX) Equation : MNXR103045 | ||
| + | * KEGG Reaction : R04509 | ||
| + | * EC Number : 2.7.4.7 | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: common name= | + | {{#set: common name=Phosphomethylpyrimidine kinase}} |
| − | {{#set: gene associated= | + | {{#set: gene associated=EF2775|EF0202}} |
| − | {{#set: in pathway=}} | + | {{#set: in pathway=map01100|map00730}} |
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
| + | {{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}} | ||
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
| − | |||
Revision as of 18:40, 18 March 2018
Contents
Reaction PMPK
- direction:
- LEFT-TO-RIGHT
- common name:
- Phosphomethylpyrimidine kinase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 ATP C10H12N5O13P3[c] + 1.0 4-Amino-2-methyl-5-phosphomethylpyrimidine[c] => 1.0 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate[c] + 1.0 ADP C10H12N5O10P2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
Pathways
- map01100: map01100
- 460 reactions found over 2349 reactions in the full pathway
- map00730: map00730
- 11 reactions found over 24 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-e_coli_sstr_k12_substr_mg1655
- Tool: pantograph
- Source: orthology-b_subtilis_subsp_subtilis_str168
- Tool: pantograph
- Source: orthology-l_plantarum_wcfs1
- Tool: pantograph
- Source: orthology-e_coli_sstr_k12_substr_mg1655
External links
- RHEA:
- BioCyc : META:PYRIMSYN3-RXN
- MetaNetX (MNX) Equation : MNXR103045
- KEGG Reaction : R04509
- EC Number : 2.7.4.7
