Difference between revisions of "CITL"

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(Created page with "Category:Metabolite == Metabolite [http://bigg.ucsd.edu/universal/metabolites/murein5p4p murein5p4p] == * common name: ** Two linked disacharide pentapeptide and tetrapept...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK8 NDPK8] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:dAD...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://bigg.ucsd.edu/universal/metabolites/murein5p4p murein5p4p] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK8 NDPK8] ==
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* direction:
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** REVERSIBLE
 
* common name:
 
* common name:
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** Two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)
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** Nucleoside-diphosphate kinase (ATP:dADP)
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[MDDCP4ppc]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1.0 [[atp]][c] '''+''' 1.0 [[dadp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[datp]][c]
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* [[MDDCP3ppc]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 DADP C10H12N5O9P2[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 DATP C10H12N5O12P3[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[EF0228]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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* [[EF1036]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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== Pathways  ==
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* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
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** '''82''' reactions found over '''244''' reactions in the full pathway
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** '''460''' reactions found over '''2349''' reactions in the full pathway
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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** '''179''' reactions found over '''1054''' reactions in the full pathway
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* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
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** '''97''' reactions found over '''298''' reactions in the full pathway
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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** '''135''' reactions found over '''694''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-l_plantarum_wcfs1]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=Two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)}}
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* RHEA:
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{{#set: consumed by=MDDCP4ppc}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27674 27674]
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{{#set: produced by=MDDCP3ppc}}
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* BioCyc : META:DADPKIN-RXN
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* MetaNetX (MNX) Equation : MNXR101940
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* KEGG Reaction : R01137
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* EC Number : 2.7.4.6
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Nucleoside-diphosphate kinase (ATP:dADP)}}
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{{#set: gene associated=EF0228|EF1036}}
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{{#set: in pathway=map00240|map01100|map01110|map00230|map01130}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
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{{#set: reconstruction tool=pantograph}}

Revision as of 18:40, 18 March 2018

Reaction NDPK8

  • direction:
    • REVERSIBLE
  • common name:
    • Nucleoside-diphosphate kinase (ATP:dADP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 DADP C10H12N5O9P2[c] <=> 1.0 ADP C10H12N5O10P2[c] + 1.0 DATP C10H12N5O12P3[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DADPKIN-RXN
  • MetaNetX (MNX) Equation : MNXR101940
  • KEGG Reaction : R01137
  • EC Number : 2.7.4.6




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