Difference between revisions of "25dkglcn"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CLPNS161 CLPNS161] == * direction: ** REVERSIBLE * common name: ** Cardiolipin synthase (n-C16:1) *...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PDH PDH] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyruvate dehydrogenase * Synonym(s): =...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/CLPNS161 CLPNS161] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PDH PDH] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Cardiolipin synthase (n-C16:1)
+
** Pyruvate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2.0 [[pg161]][c] '''<=>''' 1.0 [[clpn161]][c] '''+''' 1.0 [[glyc]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[coa]][c] '''+''' 1.0 [[pyr]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[accoa]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2.0 Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)[c] '''<=>''' 1.0 Cardiolipin (tetrahexadec-9-enoyl, n-C16:1)[c] '''+''' 1.0 Glycerol[c]
+
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Coenzyme A[c] '''+''' 1.0 Pyruvate[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 Acetyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0631]]
+
* [[EF1353]]
−
** MANUAL
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
−
* [[EF1608]]
+
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
−
** MANUAL
+
* [[EF1356]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF1355]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF1354]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''31''' reactions found over '''163''' reactions in the full pathway
 +
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 +
** '''24''' reactions found over '''149''' reactions in the full pathway
 +
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
 +
** '''4''' reactions found over '''70''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[this was a reaction occurring in the perisplasm of e. coli]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR96786
+
* EC Number : 1.2.1
−
{{#set: direction=REVERSIBLE}}
+
* BioCyc : META:PYRUVDEH-RXN
−
{{#set: common name=Cardiolipin synthase (n-C16:1)}}
+
* MetaNetX (MNX) Equation : MNXR102425
−
{{#set: gene associated=EF0631|EF1608}}
+
* RHEA:
−
{{#set: in pathway=}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28042 28042]
−
{{#set: reconstruction category=manual}}
+
* Reactome : REACT_R-ATH-71397
−
{{#set: reconstruction source=this was a reaction occurring in the perisplasm of e. coli}}
+
* KEGG Reaction : R00209
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Pyruvate dehydrogenase}}
 +
{{#set: gene associated=EF1353|EF1356|EF1355|EF1354}}
 +
{{#set: in pathway=map01100|map01110|map01120|map01200|map00620|map00010|map00020|map01130}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 18:40, 18 March 2018

Reaction PDH

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyruvate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 Coenzyme A[c] + 1.0 Pyruvate[c] => 1.0 CO2 CO2[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 Acetyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.2.1
  • BioCyc : META:PYRUVDEH-RXN
  • MetaNetX (MNX) Equation : MNXR102425
  • RHEA:
  • Reactome : REACT_R-ATH-71397
  • KEGG Reaction : R00209




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