Difference between revisions of "Phom"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYTK2 CYTK2] == * direction: ** REVERSIBLE * common name: ** Cytidylate kinase (dCMP) * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_nh3 ExchangeSeed_nh3] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/CYTK2 CYTK2] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_nh3 ExchangeSeed_nh3] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** Cytidylate kinase (dCMP)
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[dcmp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[dcdp]][c]
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** 1.0 [[nh3]][C-BOUNDARY] '''<=>''' 1.0 [[nh3]][e]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 DCMP C9H12N3O7P[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 DCDP C9H12N3O10P2[c]
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** 1.0 Ammonia[C-BOUNDARY] '''<=>''' 1.0 Ammonia[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
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* [[EF1547]]
 
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** [[pantograph]]-[[l_plantarum_wcfs1]]
 
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
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** '''460''' reactions found over '''2349''' reactions in the full pathway
 
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* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
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** '''82''' reactions found over '''244''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-import_from_medium]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[added to manage seeds from boundary to extracellular compartment]]
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*** [[l_plantarum_wcfs1]]
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−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25094 25094]
 
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* BioCyc : META:RXN-7913
 
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* MetaNetX (MNX) Equation : MNXR97053
 
−
* KEGG Reaction : R01665
 
−
* EC Number : 2.7.4.13
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
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{{#set: common name=Cytidylate kinase (dCMP)}}
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{{#set: in pathway=}}
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{{#set: gene associated=EF1547}}
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{{#set: reconstruction category=manual}}
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{{#set: in pathway=map01100|map00240}}
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{{#set: reconstruction source=manual-import_from_medium}}
−
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
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Revision as of 18:42, 18 March 2018

Reaction ExchangeSeed_nh3

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 1.0 nh3[C-BOUNDARY] <=> 1.0 nh3[e]
  • With common name(s):
    • 1.0 Ammonia[C-BOUNDARY] <=> 1.0 Ammonia[e]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=Phom&oldid=8111"