Difference between revisions of "TDMAT6 manual"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYTB_B2 CYTB_B2] == * direction: ** LEFT-TO-RIGHT * common name: ** Menaquinol oxidase 71 protons...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MCOATA MCOATA] == * direction: ** REVERSIBLE * common name: ** Malonyl-CoA-ACP transacylase * Synon...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYTB_B2 CYTB_B2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/MCOATA MCOATA] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
** Menaquinol oxidase  71 protons
+
** Malonyl-CoA-ACP transacylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[mql7]][c] '''+''' 0.5 [[o2]][c] '''+''' 2.0 [[h]][c] '''=>''' 1.0 [[mqn7]][c] '''+''' 1.0 [[h2o]][c] '''+''' 2.0 [[h]][e]
+
** 1.0 [[malcoa]][c] '''+''' 1.0 [[ACP]][c] '''<=>''' 1.0 [[coa]][c] '''+''' 1.0 [[malACP]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Menaquinol 7 C46H66O2[c] '''+''' 0.5 O2 O2[c] '''+''' 2.0 H+[c] '''=>''' 1.0 Menaquinone 7 C46H64O2[c] '''+''' 1.0 H2O H2O[c] '''+''' 2.0 H+[e]
+
** 1.0 Malonyl CoA C24H33N7O19P3S[c] '''+''' 1.0 Acyl carrier protein[c] '''<=>''' 1.0 Coenzyme A[c] '''+''' 1.0 Malonyl-[acyl-carrier protein][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2058]]
+
* [[EF3111]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
* [[EF2882]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
* [[EF2059]]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
* [[EF2061]]
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
* [[EF2060]]
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
 +
** '''36''' reactions found over '''182''' reactions in the full pathway
 +
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
 +
** '''65''' reactions found over '''160''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[pantograph]]
*** [[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR97037
+
* BioCyc : META:MALONYL-COA-ACP-TRANSACYL-RXN
{{#set: direction=LEFT-TO-RIGHT}}
+
* MetaNetX (MNX) Equation : MNXR101421
{{#set: common name=Menaquinol oxidase  71 protons }}
+
* KEGG Reaction : R01626
{{#set: gene associated=EF2058|EF2059|EF2061|EF2060}}
+
* EC Number : 2.3.1.-
{{#set: in pathway=}}
+
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Malonyl-CoA-ACP transacylase}}
 +
{{#set: gene associated=EF3111|EF2882}}
 +
{{#set: in pathway=map01100|map01212|map00061}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 18:43, 18 March 2018

Reaction MCOATA

  • direction:
    • REVERSIBLE
  • common name:
    • Malonyl-CoA-ACP transacylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Malonyl CoA C24H33N7O19P3S[c] + 1.0 Acyl carrier protein[c] <=> 1.0 Coenzyme A[c] + 1.0 Malonyl-[acyl-carrier protein][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:MALONYL-COA-ACP-TRANSACYL-RXN
  • MetaNetX (MNX) Equation : MNXR101421
  • KEGG Reaction : R01626
  • EC Number : 2.3.1.-