Difference between revisions of "PYK"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ALAALAr ALAALAr] == * direction: ** REVERSIBLE * common name: ** D-alanine-D-alanine ligase (revers...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_pnto__R ExchangeSeed_pnto__R] == * direction: ** REVERSIBLE * Synonym(s): == Reaction...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ALAALAr ALAALAr] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_pnto__R ExchangeSeed_pnto__R] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** D-alanine-D-alanine ligase (reversible)
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2.0 [[ala__D]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[pi]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[alaala]][c] '''+''' 1.0 [[adp]][c]
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** 1.0 [[pnto__R]][C-BOUNDARY] '''<=>''' 1.0 [[pnto__R]][e]
 
* With common name(s):
 
* With common name(s):
−
** 2.0 D-Alanine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 Phosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 D-Alanyl-D-alanine[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
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** 1.0 (R)-Pantothenate[C-BOUNDARY] '''<=>''' 1.0 (R)-Pantothenate[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0843]]
 
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00473]]: [http://www.genome.jp/dbget-bin/www_bget?map00473 map00473]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
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** '''460''' reactions found over '''2349''' reactions in the full pathway
 
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* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
 
−
** '''10''' reactions found over '''27''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-import_from_medium]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[added to manage seeds from boundary to extracellular compartment]]
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*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11224 11224]
 
−
* BioCyc : META:DALADALALIG-RXN
 
−
* MetaNetX (MNX) Equation : MNXR95678
 
−
* KEGG Reaction : R01150
 
−
* EC Number : 6.3.2.4
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=D-alanine-D-alanine ligase (reversible)}}
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{{#set: in pathway=}}
−
{{#set: gene associated=EF0843}}
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{{#set: reconstruction category=manual}}
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{{#set: in pathway=map00473|map01100|map00550}}
+
{{#set: reconstruction source=manual-import_from_medium}}
−
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}
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Revision as of 18:44, 18 March 2018

Reaction ExchangeSeed_pnto__R

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 (R)-Pantothenate[C-BOUNDARY] <=> 1.0 (R)-Pantothenate[e]

Genes associated with this reaction

Pathways

Reconstruction information

External links

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