Difference between revisions of "GLCTR2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP2ppc MDDCP2ppc] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DURIK1 DURIK1] == * direction: ** LEFT-TO-RIGHT * common name: ** Deoxyuridine kinase (ATP:Deoxyuri...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP2ppc MDDCP2ppc] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DURIK1 DURIK1] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Deoxyuridine kinase (ATP:Deoxyuridine)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[murein5px4px4p]][c] '''=>''' 1.0 [[murein4px4px4p]][c] '''+''' 1.0 [[ala__D]][c]
+
** 1.0 [[duri]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[dump]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 Three disacharide linked murein units (pentapeptide crosslinked tetrapeptide (A2pm->D-ala) tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)[c] '''=>''' 1.0 Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)[c] '''+''' 1.0 D-Alanine[c]
+
** 1.0 Deoxyuridine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 DUMP C9H11N2O8P[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF3129]]
+
* [[EF2555]]
−
** MANUAL
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
 +
** '''22''' reactions found over '''72''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[this was a reaction occurring in the perisplasm of e. coli]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28206 28206]
 +
* BioCyc : META:DURIDKI-RXN
 +
* MetaNetX (MNX) Equation : MNXR97817
 +
* KEGG Reaction : R02099
 +
* EC Number : 2.7.1.145
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=EF3129}}
+
{{#set: common name=Deoxyuridine kinase (ATP:Deoxyuridine)}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=EF2555}}
−
{{#set: reconstruction category=manual}}
+
{{#set: in pathway=map01100|map00240|map00983}}
−
{{#set: reconstruction source=this was a reaction occurring in the perisplasm of e. coli}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 18:44, 18 March 2018

Reaction DURIK1

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Deoxyuridine kinase (ATP:Deoxyuridine)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Deoxyuridine[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 H+[c] + 1.0 DUMP C9H11N2O8P[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DURIDKI-RXN
  • MetaNetX (MNX) Equation : MNXR97817
  • KEGG Reaction : R02099
  • EC Number : 2.7.1.145




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