Difference between revisions of "SELCYSS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR3 RNDR3] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diphosphate reductas...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/COBALT2abcpppe COBALT2abcpppe] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR3 RNDR3] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/COBALT2abcpppe COBALT2abcpppe] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** Ribonucleoside-diphosphate reductase (CDP)
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[cdp]][c] '''+''' 1.0 [[trdrd]][c] '''=>''' 1.0 [[dcdp]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[trdox]][c]
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** 1.0 [[cobalt2]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[cobalt2]][e] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 CDP C9H12N3O11P2[c] '''+''' 1.0 Reduced thioredoxin[c] '''=>''' 1.0 DCDP C9H12N3O10P2[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Oxidized thioredoxin[c]
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** 1.0 Co2+[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Co2+[e] '''+''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF0471]]
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* [[EF1400]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
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** 1_new_rxn_for_biomass
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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* [[EF0472]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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* [[EF0470]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
** '''82''' reactions found over '''244''' reactions in the full pathway
 
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
 
** '''10''' reactions found over '''39''' reactions in the full pathway
 
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
** '''97''' reactions found over '''298''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[manual]]
** [[pantograph]]:
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** Source: [[manual-1_new_rxn_for_biomass]]
*** [[l_plantarum_wcfs1]]
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*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
*** [[b_subtilis_subsp_subtilis_str168]]
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== External links  ==
 
== External links  ==
* BioCyc : META:CDPREDUCT-RXN
 
* MetaNetX (MNX) Equation : MNXR104064
 
* KEGG Reaction : R02024
 
* EC Number : 1.17.4.1
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Ribonucleoside-diphosphate reductase (CDP)}}
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{{#set: gene associated=EF1400}}
{{#set: gene associated=EF0471|EF0472|EF0470}}
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{{#set: in pathway=}}
{{#set: in pathway=map01100|map00240|map00480|map00230}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
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Revision as of 19:45, 18 March 2018

Reaction COBALT2abcpppe

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Co2+[c] + 1.0 H2O H2O[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 Co2+[e] + 1.0 H+[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links