Difference between revisions of "ARBTpts"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TYRCBOX TYRCBOX] == * direction: ** LEFT-TO-RIGHT * common name: ** L-Tyrosine carboxy-lyase * Syno...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GPDDA2 GPDDA2] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycerophosphodiester phosphodies...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/TYRCBOX TYRCBOX] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GPDDA2 GPDDA2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-Tyrosine carboxy-lyase
+
** Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[tyr__L]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[tym]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[g3pe]][c] '''=>''' 1.0 [[glyc3p]][c] '''+''' 1.0 [[etha]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Tyrosine[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Tyramine[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 Sn-Glycero-3-phosphoethanolamine[c] '''=>''' 1.0 Glycerol 3-phosphate[c] '''+''' 1.0 Ethanolamine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[EF0779]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
* [[EF2163]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00564]]: [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564]
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
** '''19''' reactions found over '''134''' reactions in the full pathway
−
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
+
−
** '''18''' reactions found over '''75''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00340]]: [http://www.genome.jp/dbget-bin/www_bget?map00340 map00340]
+
−
** '''6''' reactions found over '''90''' reactions in the full pathway
+
−
* [[map00965]]: [http://www.genome.jp/dbget-bin/www_bget?map00965 map00965]
+
−
** '''1''' reactions found over '''14''' reactions in the full pathway
+
−
* [[map00901]]: [http://www.genome.jp/dbget-bin/www_bget?map00901 map00901]
+
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
−
* [[map00950]]: [http://www.genome.jp/dbget-bin/www_bget?map00950 map00950]
+
−
** '''3''' reactions found over '''33''' reactions in the full pathway
+
−
* [[map00360]]: [http://www.genome.jp/dbget-bin/www_bget?map00360 map00360]
+
−
** '''7''' reactions found over '''109''' reactions in the full pathway
+
−
* [[map00350]]: [http://www.genome.jp/dbget-bin/www_bget?map00350 map00350]
+
−
** '''9''' reactions found over '''102''' reactions in the full pathway
+
−
* [[map00380]]: [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380]
+
−
** '''7''' reactions found over '''163''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14345 14345]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29319 29319]
−
* EC Number : 4.1.1.25
+
* BioCyc : META:RXN-14160
−
* MetaNetX (MNX) Equation : MNXR104990
+
* MetaNetX (MNX) Equation : MNXR100411
−
* KEGG Reaction : R00736
+
* KEGG Reaction : R01470
−
* BioCyc : META:TYROSINE-DECARBOXYLASE-RXN
+
* EC Number : 3.1.4.2
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=L-Tyrosine carboxy-lyase}}
+
{{#set: common name=Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)}}
−
{{#set: in pathway=map01100|map00680|map01110|map00340|map00965|map00901|map00950|map00360|map00350|map00380}}
+
{{#set: gene associated=EF0779|EF2163}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map00564}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 18:46, 18 March 2018

Reaction GPDDA2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 Sn-Glycero-3-phosphoethanolamine[c] => 1.0 Glycerol 3-phosphate[c] + 1.0 Ethanolamine[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN-14160
  • MetaNetX (MNX) Equation : MNXR100411
  • KEGG Reaction : R01470
  • EC Number : 3.1.4.2




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