Difference between revisions of "GPDDA2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DASYN140 DASYN140] == * direction: ** LEFT-TO-RIGHT * common name: ** CDP-diacylglycerol synthetase...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_D SERD_D] == * direction: ** LEFT-TO-RIGHT * common name: ** D-serine deaminase * Synonym(s):...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/DASYN140 DASYN140] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_D SERD_D] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** CDP-diacylglycerol synthetase (n-C14:0)
+
** D-serine deaminase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[ctp]][c] '''+''' 1.0 [[pa140]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[cdpdtdecg]][c] '''+''' 1.0 [[ppi]][c]
+
** 1.0 [[ser__D]][c] '''=>''' 1.0 [[pyr]][c] '''+''' 1.0 [[nh4]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 CTP C9H12N3O14P3[c] '''+''' 1.0 1,2-ditetradecanoyl-sn-glycerol 3-phosphate[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CDP-1,2-ditetradecanoylglycerol[c] '''+''' 1.0 Diphosphate[c]
+
** 1.0 D-Serine[c] '''=>''' 1.0 Pyruvate[c] '''+''' 1.0 Ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2494]]
+
* [[EF2579]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
** '''23''' reactions found over '''133''' reactions in the full pathway
* [[map00564]]: [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564]
+
** '''19''' reactions found over '''134''' reactions in the full pathway
+
* [[map04070]]: [http://www.genome.jp/dbget-bin/www_bget?map04070 map04070]
+
** '''8''' reactions found over '''21''' reactions in the full pathway
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-l_plantarum_wcfs1]]
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR97155
+
* RHEA:
* EC Number : 2.7.7.41
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13977 13977]
 +
* BioCyc : META:DSERDEAM-RXN
 +
* MetaNetX (MNX) Equation : MNXR104338
 +
* KEGG Reaction : R00221
 +
* EC Number : 4.3.1.18
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=CDP-diacylglycerol synthetase (n-C14:0)}}
+
{{#set: common name=D-serine deaminase}}
{{#set: gene associated=EF2494}}
+
{{#set: gene associated=EF2579}}
{{#set: in pathway=map01100|map00564|map04070|map01110}}
+
{{#set: in pathway=map00260}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Revision as of 18:46, 18 March 2018

Reaction SERD_D

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • D-serine deaminase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Serine[c] => 1.0 Pyruvate[c] + 1.0 Ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DSERDEAM-RXN
  • MetaNetX (MNX) Equation : MNXR104338
  • KEGG Reaction : R00221
  • EC Number : 4.3.1.18