Difference between revisions of "MLTG4"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PTRCOX1 PTRCOX1] == * direction: ** LEFT-TO-RIGHT * common name: ** Putrescine:oxygen oxidoreductas...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SHK3Dr SHK3Dr] == * direction: ** REVERSIBLE * common name: ** Shikimate dehydrogenase * Synonym(s)...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PTRCOX1 PTRCOX1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SHK3Dr SHK3Dr] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Putrescine:oxygen oxidoreductase (deaminating)
+
** Shikimate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ptrc]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[o2]][c] '''=>''' 1.0 [[h2o2]][c] '''+''' 1.0 [[4abutn]][c] '''+''' 1.0 [[nh4]][c]
+
** 1.0 [[nadph]][c] '''+''' 1.0 [[3dhsk]][c] '''+''' 1.0 [[h]][c] '''<=>''' 1.0 [[skm]][c] '''+''' 1.0 [[nadp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Putrescine[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 O2 O2[c] '''=>''' 1.0 Hydrogen peroxide[c] '''+''' 1.0 4-Aminobutanal[c] '''+''' 1.0 Ammonium[c]
+
** 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 3-Dehydroshikimate[c] '''+''' 1.0 H+[c] '''<=>''' 1.0 Shikimate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[EF1561]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
 +
** '''13''' reactions found over '''59''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 1.1.1.25
 +
* BioCyc : META:SHIKIMATE-5-DEHYDROGENASE-RXN
 +
* MetaNetX (MNX) Equation : MNXR104378
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18273 18273]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737]
−
* EC Number : 1.4.3.10
+
* Reactome : REACT_R-MTU-964842
−
* MetaNetX (MNX) Equation : MNXR103334
+
* KEGG Reaction : R02413
−
* KEGG Reaction : R01151
+
{{#set: direction=REVERSIBLE}}
−
* BioCyc : META:PUTRESCINE-OXIDASE-RXN
+
{{#set: common name=Shikimate dehydrogenase}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: gene associated=EF1561}}
−
{{#set: common name=Putrescine:oxygen oxidoreductase (deaminating)}}
+
{{#set: in pathway=map01100|map01130|map00400|map01110|map01230}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=added for gapfilling}}
+

Revision as of 19:46, 18 March 2018

Reaction SHK3Dr

  • direction:
    • REVERSIBLE
  • common name:
    • Shikimate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 1.0 3-Dehydroshikimate[c] + 1.0 H+[c] <=> 1.0 Shikimate[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.1.1.25
  • BioCyc : META:SHIKIMATE-5-DEHYDROGENASE-RXN
  • MetaNetX (MNX) Equation : MNXR104378
  • RHEA:
  • Reactome : REACT_R-MTU-964842
  • KEGG Reaction : R02413




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