Difference between revisions of "HISt2r"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EGMEACPR EGMEACPR] == * direction: ** LEFT-TO-RIGHT * common name: ** Enoylglutaryl-[ACP] methyl es...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PTRCOX1 PTRCOX1] == * direction: ** LEFT-TO-RIGHT * common name: ** Putrescine:oxygen oxidoreductas...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/EGMEACPR EGMEACPR] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PTRCOX1 PTRCOX1] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Enoylglutaryl-[ACP] methyl ester reductase
+
** Putrescine:oxygen oxidoreductase (deaminating)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h]][c] '''+''' 1.0 [[nadph]][c] '''+''' 1.0 [[egmeACP]][c] '''=>''' 1.0 [[gmeACP]][c] '''+''' 1.0 [[nadp]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[ptrc]][c] '''+''' 1.0 [[o2]][c] '''=>''' 1.0 [[4abutn]][c] '''+''' 1.0 [[nh4]][c] '''+''' 1.0 [[h2o2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 Enoylglutaryl-[acyl-carrier protein] methyl ester[c] '''=>''' 1.0 Glutaryl-[acyl-carrier protein] methyl ester[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 Putrescine[c] '''+''' 1.0 O2 O2[c] '''=>''' 1.0 4-Aminobutanal[c] '''+''' 1.0 Ammonium[c] '''+''' 1.0 Hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0282]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00780]]: [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780]
 
−
** '''26''' reactions found over '''67''' reactions in the full pathway
 
−
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
 
−
** '''65''' reactions found over '''160''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR97906
+
* RHEA:
−
* KEGG Reaction : R10118
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18273 18273]
−
* EC Number : 1.3.1.10
+
* EC Number : 1.4.3.10
 +
* MetaNetX (MNX) Equation : MNXR103334
 +
* KEGG Reaction : R01151
 +
* BioCyc : META:PUTRESCINE-OXIDASE-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Enoylglutaryl-[ACP] methyl ester reductase}}
+
{{#set: common name=Putrescine:oxygen oxidoreductase (deaminating)}}
−
{{#set: gene associated=EF0282}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=map01100|map00780|map00061}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 18:46, 18 March 2018

Reaction PTRCOX1

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Putrescine:oxygen oxidoreductase (deaminating)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 Putrescine[c] + 1.0 O2 O2[c] => 1.0 4-Aminobutanal[c] + 1.0 Ammonium[c] + 1.0 Hydrogen peroxide[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 1.4.3.10
  • MetaNetX (MNX) Equation : MNXR103334
  • KEGG Reaction : R01151
  • BioCyc : META:PUTRESCINE-OXIDASE-RXN




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