Difference between revisions of "CDPMEK"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGMT PGMT] == * direction: ** REVERSIBLE * common name: ** Phosphoglucomutase * Synonym(s): == Rea...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NTD2 NTD2] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase (UMP) * Synonym(s):...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PGMT PGMT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NTD2 NTD2] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phosphoglucomutase
+
** 5'-nucleotidase (UMP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[g1p]][c] '''<=>''' 1.0 [[g6p]][c]
+
** 1.0 [[ump]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[uri]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 D-Glucose 1-phosphate[c] '''<=>''' 1.0 D-Glucose 6-phosphate[c]
+
** 1.0 UMP C9H11N2O9P[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Uridine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0369]]
+
* [[EF0062]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
* [[EF0677]]
+
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
−
* [[EF2425]]
+
* [[EF0822]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00521]]: [http://www.genome.jp/dbget-bin/www_bget?map00521 map00521]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''7''' reactions found over '''14''' reactions in the full pathway
+
** '''82''' reactions found over '''244''' reactions in the full pathway
−
* [[map00520]]: [http://www.genome.jp/dbget-bin/www_bget?map00520 map00520]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''24''' reactions found over '''80''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00500]]: [http://www.genome.jp/dbget-bin/www_bget?map00500 map00500]
+
−
** '''15''' reactions found over '''81''' reactions in the full pathway
+
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
** '''179''' reactions found over '''1054''' reactions in the full pathway
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
** '''97''' reactions found over '''298''' reactions in the full pathway
 +
* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
 +
** '''19''' reactions found over '''97''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* BioCyc : META:PHOSPHOGLUCMUT-RXN
+
* RHEA:
−
* MetaNetX (MNX) Equation : MNXR102548
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29359 29359]
−
* KEGG Reaction : R08639
+
* BioCyc : META:RXN-14025
−
* EC Number : 5.4.2.2
+
* MetaNetX (MNX) Equation : MNXR102032
−
{{#set: direction=REVERSIBLE}}
+
* KEGG Reaction : R00963
−
{{#set: common name=Phosphoglucomutase}}
+
* EC Number : 3.1.3.5
−
{{#set: gene associated=EF0369|EF0677|EF2425}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=map00521|map00520|map00500|map01110|map01130}}
+
{{#set: common name=5'-nucleotidase (UMP)}}
 +
{{#set: gene associated=EF0062|EF0822}}
 +
{{#set: in pathway=map00240|map01100|map01110|map00230|map00760}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 18:46, 18 March 2018

Reaction NTD2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5'-nucleotidase (UMP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 UMP C9H11N2O9P[c] + 1.0 H2O H2O[c] => 1.0 Phosphate[c] + 1.0 Uridine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN-14025
  • MetaNetX (MNX) Equation : MNXR102032
  • KEGG Reaction : R00963
  • EC Number : 3.1.3.5




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