Difference between revisions of "ExchangeSeed btn"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYt2pp_copy1 GLYt2pp_copy1] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycine transport i...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGCD PGCD] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoglycerate dehydrogenase * Syno...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYt2pp_copy1 GLYt2pp_copy1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PGCD PGCD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glycine transport in via proton symport (periplasm)
+
** Phosphoglycerate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[gly]][p] '''+''' 1.0 [[h]][p] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[gly]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[3pg]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[3php]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Glycine[p] '''+''' 1.0 H+[p] '''=>''' 1.0 H+[c] '''+''' 1.0 Glycine[c]
+
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 3-Phospho-D-glycerate[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 3-Phosphohydroxypyruvate[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1103]]
+
* [[EF2901]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
* [[EF3141]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 +
** '''18''' reactions found over '''75''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''23''' reactions found over '''133''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
−
** [[curation_from_orthology]]
+
 
== External links  ==
 
== External links  ==
 +
* EC Number : 1.1.1.95
 +
* BioCyc : META:PGLYCDEHYDROG-RXN
 +
* MetaNetX (MNX) Equation : MNXR102527
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
 +
* Reactome : REACT_R-ATH-977348
 +
* KEGG Reaction : R01513
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glycine transport in via proton symport (periplasm)}}
+
{{#set: common name=Phosphoglycerate dehydrogenase}}
−
{{#set: gene associated=EF1103}}
+
{{#set: gene associated=EF2901|EF3141}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map01100|map01120|map01200|map01230|map00680|map00260|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=curation_from_orthology}}
 

Revision as of 19:46, 18 March 2018

Reaction PGCD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phosphoglycerate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 3-Phospho-D-glycerate[c] => 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 3-Phosphohydroxypyruvate[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.1.1.95
  • BioCyc : META:PGLYCDEHYDROG-RXN
  • MetaNetX (MNX) Equation : MNXR102527
  • RHEA:
  • Reactome : REACT_R-ATH-977348
  • KEGG Reaction : R01513




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