|
|
Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Gene]] |
− | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630] == | + | == Gene EF0981 == |
− | * common_name:
| + | |
− | ** Glyoxylate and dicarboxylate metabolism
| + | |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction(s) found == | + | == Reactions associated == |
− | '''21''' reactions found over '''129''' reactions in the full pathway
| + | * Reaction: [[DMATT]] |
− | * [[ACACT1r]] | + | ** Source: [[orthology-l_plantarum_wcfs1]] |
− | ** 1 associated gene(s):
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
− | *** [[EF1364]]
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] |
− | ** 2 reconstruction source(s) associated: | + | * Reaction: [[GRTT]] |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | ** Source: [[orthology-l_plantarum_wcfs1]] |
− | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
− | * [[ACONTa]]
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] |
− | ** 0 associated gene:
| + | == Pathways associated == |
− | ** 1 reconstruction source(s) associated:
| + | * [[map01100]] |
− | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | * [[map01130]] |
− | * [[CAT]]
| + | * [[map01110]] |
− | ** 1 associated gene(s):
| + | * [[map00900]] |
− | *** [[EF1597]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
− | *** [[orthology-l_plantarum_wcfs1]]
| + | |
− | * [[GCALDD]] | + | |
− | ** 1 associated gene(s): | + | |
− | *** [[EF0253]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
− | * [[GHMT2r]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF2550]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | *** [[orthology-b_subtilis_subsp_subtilis_str168]] | + | |
− | *** [[orthology-l_plantarum_wcfs1]]
| + | |
− | * [[GLNS]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF2159]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
− | *** [[orthology-l_plantarum_wcfs1]] | + | |
− | * [[GLXCL]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF1213]]
| + | |
− | ** 1 reconstruction source(s) associated: | + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | * [[GLXO3r]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
− | * [[GLYCK]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF2646]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
− | *** [[orthology-l_plantarum_wcfs1]]
| + | |
− | * [[GLYCK2]] | + | |
− | ** 1 associated gene(s): | + | |
− | *** [[EF2646]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | * [[GLYCLTDx]] | + | |
− | ** 1 associated gene(s): | + | |
− | *** [[EF3141]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | * [[GLYCLTDy]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF3141]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | * [[GLYCTO1]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
− | * [[GLYTA]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
− | * [[HPYRRx]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF3141]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | * [[HPYRRy]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF3141]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | * [[LALDO2x]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF1358]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | * [[LCARS]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF1635]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | * [[MDH]]
| + | |
− | ** 3 associated gene(s):
| + | |
− | *** [[EF0641]]
| + | |
− | *** [[EF0255]]
| + | |
− | *** [[EF0388]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | *** [[orthology-l_plantarum_wcfs1]]
| + | |
− | * [[PGLYCP]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[EF2927]]
| + | |
− | *** [[EF2916]]
| + | |
− | *** [[EF2481]]
| + | |
− | *** [[EF0369]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
− | *** [[orthology-l_plantarum_wcfs1]]
| + | |
− | * [[TRSARr]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[EF2889]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
− | == Reaction(s) not found == | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3HBCDm 3HBCDm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AACOAR_syn AACOAR_syn]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACONT ACONT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACONTb ACONTb]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALCD21_D ALCD21_D]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CAT2p CAT2p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CATm CATm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CATp CATp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CS CS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CSm CSm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CSp CSp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DDPGA DDPGA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DDPGAm DDPGAm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1 ECOAH1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FCOAH FCOAH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FCOAH2 FCOAH2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDH FDH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDH2 FDH2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDH3 FDH3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDH5r2pp FDH5r2pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDNG FDNG]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FKYNH FKYNH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FORA FORA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FORAMD FORAMD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FORAMDx FORAMDx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FTHFD FTHFD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GALh GALh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GALm GALm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GCALDDm GCALDDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GHMT2rm GHMT2rm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLNSP1 GLNSP1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLNSP2 GLNSP2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLNSP3 GLNSP3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLXO2p GLXO2p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYCDH_1 GLYCDH_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYCLTDym GLYCLTDym]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYCTO1p GLYCTO1p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYPT GLYPT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HBCHLR HBCHLR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HOXPRm HOXPRm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPYRDC HPYRDC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPYRDCm HPYRDCm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPYRI HPYRI]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ICL ICL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ICL_1 ICL_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LCARR LCARR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MALS MALS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MALSh MALSh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MALSm MALSm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MALSp MALSp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MME MME]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NFORGLUAH NFORGLUAH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OXACOAL OXACOAL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OXADC OXADC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OXADCm OXADCm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OXCDC OXCDC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGLYCPh PGLYCPh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGLYCPx PGLYCPx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPCOAC PPCOAC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBCh RBCh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBCh_1 RBCh_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBPC RBPC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBPCh RBPCh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RHACOAR100 RHACOAR100]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RHACOAR140 RHACOAR140]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RHACOAR60 RHACOAR60]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RHACOAR80 RHACOAR80]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SGAT SGAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SPT_syn SPT_syn]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/TARTD TARTD]
| + | |
| == External links == | | == External links == |
− | {{#set: common_name=Glyoxylate and dicarboxylate metabolism}} | + | {{#set: reaction associated=DMATT|GRTT}} |
− | {{#set: reaction found=21}}
| + | {{#set: pathway associated=map01100|map01130|map01110|map00900}} |
− | {{#set: total reaction=129}}
| + | |
− | {{#set: completion rate=16.0}} | + | |