Difference between revisions of "4pasp"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DHFR DHFR] == * direction: ** REVERSIBLE * common name: ** Dihydrofolate reductase * Synonym(s): =...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYXI LYXI] == * direction: ** LEFT-TO-RIGHT * common name: ** Lyxose isomerase * Synonym(s): == Re...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/DHFR DHFR] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/LYXI LYXI] ==
 
* direction:
 
* direction:
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Dihydrofolate reductase
+
** Lyxose isomerase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[h]][c] '''+''' 1.0 [[nadph]][c] '''+''' 1.0 [[dhf]][c] '''<=>''' 1.0 [[thf]][c] '''+''' 1.0 [[nadp]][c]
+
** 1.0 [[lyx__L]][c] '''=>''' 1.0 [[xylu__L]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 7,8-Dihydrofolate[c] '''<=>''' 1.0 5,6,7,8-Tetrahydrofolate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
+
** 1.0 L-Lyxose[c] '''=>''' 1.0 L-Xylulose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF1577]]
+
* [[EF0434]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
** '''15''' reactions found over '''54''' reactions in the full pathway
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
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** '''14''' reactions found over '''65''' reactions in the full pathway
+
* [[map00790]]: [http://www.genome.jp/dbget-bin/www_bget?map00790 map00790]
+
** '''12''' reactions found over '''41''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
*** [[l_plantarum_wcfs1]]
+
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR101270
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15009 15009]
+
* KEGG Reaction : R01906
* Reactome : REACT_R-BTA-197972
+
* EC Number : 5.3.1.-
* MetaNetX (MNX) Equation : MNXR97401
+
{{#set: direction=LEFT-TO-RIGHT}}
* KEGG Reaction : R00939
+
{{#set: common name=Lyxose isomerase}}
* EC Number : 1.5.1.3
+
{{#set: gene associated=EF0434}}
{{#set: direction=REVERSIBLE}}
+
{{#set: in pathway=map00040}}
{{#set: common name=Dihydrofolate reductase}}
+
{{#set: gene associated=EF1577}}
+
{{#set: in pathway=map01100|map00670|map00790}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 19:38, 18 March 2018

Reaction LYXI

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lyxose isomerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Lyxose[c] => 1.0 L-Xylulose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR101270
  • KEGG Reaction : R01906
  • EC Number : 5.3.1.-