Difference between revisions of "4ppan"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UAPGR UAPGR] == * direction: ** LEFT-TO-RIGHT * common name: ** UDP-N-acetylenolpyruvoylglucosamine...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MECDPS MECDPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-C-methyl-D-erythritol 2,4-cyclo...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/UAPGR UAPGR] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/MECDPS MECDPS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** UDP-N-acetylenolpyruvoylglucosamine reductase
+
** 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[nadph]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[uaccg]][c] '''=>''' 1.0 [[nadp]][c] '''+''' 1.0 [[uamr]][c]
+
** 1.0 [[2p4c2me]][c] '''=>''' 1.0 [[cmp]][c] '''+''' 1.0 [[2mecdp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 H+[c] '''+''' 1.0 UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 UDP-N-acetylmuramate[c]
+
** 1.0 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1.0 CMP C9H12N3O8P[c] '''+''' 1.0 2-C-methyl-D-erythritol 2,4-cyclodiphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2733]]
+
* [[EF0042]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
−
* [[EF2489]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00520]]: [http://www.genome.jp/dbget-bin/www_bget?map00520 map00520]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''24''' reactions found over '''80''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
−
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''10''' reactions found over '''27''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
 +
** '''14''' reactions found over '''67''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[e_coli_sstr_k12_substr_mg1655]]
 
*** [[e_coli_sstr_k12_substr_mg1655]]
−
*** [[l_plantarum_wcfs1]]
 
 
*** [[b_subtilis_subsp_subtilis_str168]]
 
*** [[b_subtilis_subsp_subtilis_str168]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12248 12248]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864]
−
* BioCyc : META:UDPNACETYLMURAMATEDEHYDROG-RXN
+
* BioCyc : META:RXN0-302
−
* MetaNetX (MNX) Equation : MNXR105041
+
* MetaNetX (MNX) Equation : MNXR101424
−
* KEGG Reaction : R03192
+
* KEGG Reaction : R05637
−
* EC Number : 1.3.1.98
+
* EC Number : 4.6.1.12
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=UDP-N-acetylenolpyruvoylglucosamine reductase}}
+
{{#set: common name=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase}}
−
{{#set: gene associated=EF2733|EF2489}}
+
{{#set: gene associated=EF0042}}
−
{{#set: in pathway=map01100|map00520|map00550}}
+
{{#set: in pathway=map01100|map01130|map01110|map00900}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}

Revision as of 16:58, 10 January 2018

Reaction MECDPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] => 1.0 CMP C9H12N3O8P[c] + 1.0 2-C-methyl-D-erythritol 2,4-cyclodiphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN0-302
  • MetaNetX (MNX) Equation : MNXR101424
  • KEGG Reaction : R05637
  • EC Number : 4.6.1.12




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